PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0223s0022.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 123aa MW: 14455.4 Da PI: 10.6285

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0223s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	6.8e-15	8	52	7	51
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +rr+++NRe+ArrsR RK++ ++eL v L +eN+aL ++ ++ Kalax.0223s0022.1.p 8 QRRMISNRESARRSRMRKQKHLDELWSQVTRLRTENHALLDKFNH 52 89*************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-10	1	66	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.496	8	67	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-12	8	52	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.80E-16	8	51	No hit	No description
SuperFamily	SSF57959	3.13E-13	8	56	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-13	8	78	No hit	No description
PROSITE pattern	PS00036	0	9	24	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
SRRLTTWQRR MISNRESARR SRMRKQKHLD ELWSQVTRLR TENHALLDKF NHVFESHSQV 60 VQENVKLKDE VSQLRKMVAD LQITSPETFL RELREMPCIT DNAREASPKS NHSISSSIDL 120 LD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	25	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530800.1	4e-46	basic leucine zipper 43
Swissprot	Q9FMC2	8e-27	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	B9SXT1	9e-45	B9SXT1_RICCO; Ocs element-binding factor, putative
STRING	XP_002530800.1	1e-45	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	5e-35	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Kalax.0223s0022.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]