PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0223s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 395aa    MW: 44595.4 Da    PI: 6.9099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0223s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.9e-53201471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp  +k+++++ ewyf+s  dkky +g r nrat +gyWkatg+
  Kalax.0223s0044.1.p  20 LAPGFRFHPTDEELVRYYLTRKVCGKNVRI-DAISEADIYKMEPWDLPglSKMRSRDLEWYFYSALDKKYGNGARMNRATCKGYWKATGN 108
                          579***************************.99***************6448888888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + ++++vg+kktLvf+kgrap g++t+Wvmheyrl
  Kalax.0223s0044.1.p 109 DRSVNH-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 147
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-6016170IPR003441NAC domain
PROSITE profilePS5100556.48820170IPR003441NAC domain
PfamPF023651.6E-2622147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAIICHENKA VTSPPPPPAL APGFRFHPTD EELVRYYLTR KVCGKNVRID AISEADIYKM  60
EPWDLPGLSK MRSRDLEWYF YSALDKKYGN GARMNRATCK GYWKATGNDR SVNHESRTVG  120
MKKTLVFHKG RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ  180
YAPFDESEWD DNQLVLVPGS ETGDEGLVSD ETKPRDSSSL EGNNQDEKHQ ETQPEKTENH  240
LRERDFLGTA LVCKNEKLDS WSLPSIVRAK RPRHFGSDPS RTKSSSSSSL PSDPSLSIKT  300
AVTMADAAAL AARTLLEFPK ESPQPSRFDI ASFDIPVHPS YLDLINNLQK EIHMVSADRD  360
KFRIEMMHAQ AMIDVLQSRI NFLLQENEEL KKSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4861703165NO APICAL MERISTEM PROTEIN
1ut4_B3e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_A3e-4861703165NO APICAL MERISTEM PROTEIN
1ut7_B3e-4861703165NO APICAL MERISTEM PROTEIN
4dul_A3e-4861703165NAC domain-containing protein 19
4dul_B3e-4861703165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619467.11e-135PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S3WXV31e-134A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like
STRINGXP_009619467.11e-135(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.26e-89NAC domain containing protein 50