PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0226s0021.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 232aa MW: 26484.1 Da PI: 9.346

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0226s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.1	2.1e-37	17	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptdee+v +yLk kv g +l++ +vi+e+++++++Pw+Lp ++e++ yfF++++ + + + + ra+++gyWk+tg+d+ Kalax.0226s0021.1.p 17 LPPGFRFEPTDEEIVFQYLKCKVFGLPLPA-SVIPEINLCRYHPWELP---GESEQDKYFFCHKNMNVS--RSNCRAARNGYWKSTGEDR 100 79**************************.99***********...3467889*998775..5778999******** PP NAM 91 evlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++s+ +++ +gl+kt vf +g ++ +++++dW+mhey+l Kalax.0226s0021.1.p 101 LIISSstvDDRIIGLRKTSVFCRGkSSWESTRSDWIMHEYHL 142 987777778*******994556889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-43	13	177	IPR003441	NAC domain
PROSITE profile	PS51005	42.912	17	177	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MENEKQLNFV RDGVCKLPPG FRFEPTDEEI VFQYLKCKVF GLPLPASVIP EINLCRYHPW 60 ELPGESEQDK YFFCHKNMNV SRSNCRAARN GYWKSTGEDR LIISSSTVDD RIIGLRKTSV 120 FCRGKSSWES TRSDWIMHEY HLLFTCSSAR CKSQAVNSRR SFLMMKEGWT ICHIFLKSNK 180 PRSCKSVTRN KRTRDFDSAD GLKFLKLDNG EKTTPSSSSS SSSSVTEKSS A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	17	179	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	17	179	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	17	179	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	17	179	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	17	179	20	170	NAC domain-containing protein 19
3swm_B	1e-28	17	179	20	170	NAC domain-containing protein 19
3swm_C	1e-28	17	179	20	170	NAC domain-containing protein 19
3swm_D	1e-28	17	179	20	170	NAC domain-containing protein 19
3swp_A	1e-28	17	179	20	170	NAC domain-containing protein 19
3swp_B	1e-28	17	179	20	170	NAC domain-containing protein 19
3swp_C	1e-28	17	179	20	170	NAC domain-containing protein 19
3swp_D	1e-28	17	179	20	170	NAC domain-containing protein 19
4dul_A	1e-28	17	179	17	167	NAC domain-containing protein 19
4dul_B	1e-28	17	179	17	167	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022738236.1	5e-61	NAC domain-containing protein 83-like
Refseq	XP_027125006.1	5e-61	NAC domain-containing protein 83-like
Refseq	XP_027168314.1	5e-61	NAC domain-containing protein 83-like
TrEMBL	A0A068V2V0	1e-58	A0A068V2V0_COFCA; Uncharacterized protein
STRING	cassava4.1_014491m	4e-58	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-48	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Kalax.0226s0021.1.p