PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0226s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 344aa    MW: 38833.2 Da    PI: 6.7565
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0226s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k
  Kalax.0226s0054.1.p  38 FLTKTYHLVDDPSTDHVVSWGDDHSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEK 118
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Kalax.0226s0054.1.p 119 HLLCEIHRRKTS 130
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3830122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5834127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALIMEPNSN SGSCYNYDDN MNNILLSLDS HKSVPAPFLT KTYHLVDDPS TDHVVSWGDD  60
HSTFVVWRPP EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN EFFRKGEKHL  120
LCEIHRRKTS QPQVSINHHH QGQYSQQFGF GPQAYLPYPS RLSISPPESD DNNNNFPIWG  180
CDSDQRSHPQ ISAPTTAAMI NGYSGIDGGS GAVALCEDND RLRRSNTMLM SELAHMRKLY  240
NDIIYFVQNH VKPVAPSDAY HHHPPTLSPP CGRAAARRVG NFDNVSNDTS QSSVTVVEEA  300
ENDEDEDRRM RLFGVPLLRS SSSASKKRLH SELGLNLMPP SPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-223413017123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768815e-73AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068333.11e-128heat stress transcription factor B-4
SwissprotQ9C6351e-105HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE11e-126A0A067LCE1_JATCU; Uncharacterized protein
STRINGXP_002510200.11e-124(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-101heat shock transcription factor B4