PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0227s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 497aa    MW: 54552.8 Da    PI: 4.7502
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0227s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.4e-34391292102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d++++ +isws+++nsfvv+d+ ef   +LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Kalax.0227s0028.1.p  39 FLSKTFDMVDDPSTDAIISWSSSKNSFVVWDPPEFGV-LLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 118
                          9***********************************9.***************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i rkk 
  Kalax.0227s0028.1.p 119 HLLKTISRKKP 129
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3730122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-3235127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5935127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3039127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDRSKAENGG AAPISAKPEA AAPPPTPAPT SNSNAPPPFL SKTFDMVDDP STDAIISWSS  60
SKNSFVVWDP PEFGVLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LKTISRKKPP HGQNRPHTQQ SQNPNSACVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ  180
QQSTDNQLQT MVNRLHGMEQ RQQQMMSFLA KVVQSPGFLA QFVQQQAESK RITGGNKKRR  240
TKPEHISKNE ASSSDGQIVK YQSYANGTTK AMLRQLWDID GSSQSDSFNN KPDSFPVDGI  300
LSPNMPNKEN SAIPISGAVL QGASEISEKP VALGAPECKA NIGGGKDQPT PAGSVSEVTT  360
NQPSKTLGSL FGTQDITQVS HPQSDVIMDE FPPFLDMAPE SIMDITYDEL LLDPPSIEAD  420
GAFPPLDIDS ISIVDSFFNE DEELWDMLNE KSEGTDAASD CATTVNKNNS QPAEAERMDS  480
LTEQTGLFSS DPKTTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251012710129Heat shock factor protein 1
5d5v_B3e-251012710129Heat shock factor protein 1
5d5v_D3e-251012710129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242NKKRRTKP
2236241KKRRTK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631489.11e-158PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-134HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLF6HT621e-157F6HT62_VITVI; Uncharacterized protein
STRINGVIT_02s0012g01810.t011e-157(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-105heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]