PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0227s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bZIP
Protein Properties Length: 378aa    MW: 39815.7 Da    PI: 8.3975
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0227s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.79.6e-22300362163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++ ++e+++l se+
  Kalax.0227s0035.1.p 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENATLRAEVNRVRNEYEQLASEN 362
                          89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.9E-26196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-45135269No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-18294359No hitNo description
PfamPF001702.8E-19300362IPR004827Basic-leucine zipper domain
SMARTSM003382.8E-22300364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.357302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-11303359No hitNo description
CDDcd147025.16E-25305355No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGSNDAEKTS REKEPKTVPA ATQEQSSATS TGTVNAEWPV FQAFSPMPAH SYLASSPQAH  60
PYMWGVQHIV PPYGAPPPYV AMYPHHGGIY AHPSMPPGSY PFSPFAMPSP NGIVEASGNT  120
PGAVEADGKS SEGKEKLPIK RSKGSLGNLN MITGKNNDAA KASTASANGA YSKSGESGSE  180
GSTDGSDANS QNDSHLKSGD RQDSLEGTET SQNGSSLHGS QNGGSGTPNT APSQTTAAVP  240
VAPGGIPGPA TNLNIGMEYW GAPATSSVPL LQGKVPFTAA GRANVPGSRD IQPQIWLQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLKEE NATLRAEVNR VRNEYEQLAS  360
ENASLKERLG SNPAKGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238155.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-158BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A061G6P80.0A0A061G6P8_THECC; BZIP domain class transcription factor isoform 1
STRINGXP_008238155.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-123basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]