PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0227s0051.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 344aa    MW: 38676.6 Da    PI: 9.6362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0227s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.61.1e-44171741128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..lelee.................vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                          lppGfrF Ptd el+++yL +k+++++  ++                     + evd++++ePw++p ++  ++ke+yf+s+r++kyatg
  Kalax.0227s0051.1.p  17 LPPGFRFYPTDGELICDYLMNKTSKTSsrIR--CrdsnntdsssapplhvpQLIEVDLNTSEPWQIPGRACVGRKECYFYSQRERKYATG 104
                          79*********************99995522..2346678889999998866999************77777899*************** PP

                  NAM  72 krknratksgyWkatgkdkevlsk..kgel.............vglkktLvfykgrapkgektdWvmheyrl 128
                           r+nratk+gyWkatgkdk+v+ +  +                vg++ktLvfy+grapkg+kt+Wvmhe+rl
  Kalax.0227s0051.1.p 105 MRRNRATKTGYWKATGKDKAVYGSsrS--CrspspspspspslVGMRKTLVFYRGRAPKGRKTEWVMHEFRL 174
                          **********************97440..25566677777777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-517199IPR003441NAC domain
PROSITE profilePS5100547.55817199IPR003441NAC domain
PfamPF023654.6E-2418174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRKQSRRSSI EVVEEKLPPG FRFYPTDGEL ICDYLMNKTS KTSSRIRCRD SNNTDSSSAP  60
PLHVPQLIEV DLNTSEPWQI PGRACVGRKE CYFYSQRERK YATGMRRNRA TKTGYWKATG  120
KDKAVYGSSR SCRSPSPSPS PSPSLVGMRK TLVFYRGRAP KGRKTEWVMH EFRLLKPSSL  180
LSSSIKEQED WVLCRVFHKH ISGSRCITQP ASSPLPQLTH DPYLALPQPQ TDSNMVIAMN  240
QDRHHSNGDH QQVPCFSILS SHSQTMSYSY PAILSNAPSF PIKPSNVEVV FDHQITMTAT  300
TDDSASNKSK SKEASLNDFD GGNGNSSSGI YLCESMWKHH QQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-441720517171NO APICAL MERISTEM PROTEIN
1ut4_B2e-441720517171NO APICAL MERISTEM PROTEIN
1ut7_A2e-441720517171NO APICAL MERISTEM PROTEIN
1ut7_B2e-441720517171NO APICAL MERISTEM PROTEIN
3swm_A2e-441720520174NAC domain-containing protein 19
3swm_B2e-441720520174NAC domain-containing protein 19
3swm_C2e-441720520174NAC domain-containing protein 19
3swm_D2e-441720520174NAC domain-containing protein 19
3swp_A2e-441720520174NAC domain-containing protein 19
3swp_B2e-441720520174NAC domain-containing protein 19
3swp_C2e-441720520174NAC domain-containing protein 19
3swp_D2e-441720520174NAC domain-containing protein 19
4dul_A2e-441720517171NAC domain-containing protein 19
4dul_B2e-441720517171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450146.14e-74PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE66e-73NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2G2Z6Q39e-72A0A2G2Z6Q3_CAPAN; NAC domain-containing protein 21/22 (Fragment)
STRINGCagra.6372s0006.1.p4e-72(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.26e-73NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]