PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0229s0041.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 741aa MW: 80464.2 Da PI: 6.1303

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0229s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.3	3.9e-20	599	696	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +kvl++sdv+++gr+vlpkk ae+h ++ + ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fvk+ngL+egDf+v++ + Kalax.0229s0041.1.p 599 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--S 685 79***********************999999****7778***99777777777777.******************..6 PP S.SEE..EEEE CS B3 87 r.sefelvvkv 96 + ++++++++ Kalax.0229s0041.1.p 686 DiKCGKYMIRG 696 77999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-27	592	704	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	3.17E-34	596	697	No hit	No description
SuperFamily	SSF101936	6.87E-22	597	691	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.348	598	700	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-19	598	700	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-16	599	695	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MVTKAGVGLE EGGRRSDNLM HAAPPDAAEV DGDDVMVDLS CFGGYSSAEA AMEEADHQDL 60 MENAAAIFCD DLIPPLPDFQ CMSSSSSSSS STAVKPVAYR STASSSVSSS SSSWAVLRSD 120 GEEQHNTGGE CINNHQPQQV ALSSTASMEM YPQSGQSNRL DEGDDIGCMD VMETLSYMDL 180 LDENGQVWDY SDSPVFDCNR EEAFQCNREA ENQPQPPHAA AATASEFVHE KGDNSEGLDK 240 SEDLAMVFFE WLKSNKESVS AEDLRSIKLK KSTIETAAKR LGNGKEGMKR LLQLILEWVQ 300 QHQLQRKRRR EEEAAAAATM VGGQAGFPNQ PYPVQYPTQP FQSQDADFIN SNLQPDPVGF 360 TGAVNPPPWS VGSSAGFDHM VAVGVPAAGA GYVGGGDRFG HLSNMVDQPA ATPWPPAALP 420 FCMNYGDNSR SVQNLSPVAL QQAYPFGAGA FNQYPYQYYP AVGNGSTLNG PASDDGLART 480 GSSATKEARK KRMARQRRFS SHHRHHYHHH SSSSNSHGLH HVNNGQSNQM NMAVGTASPH 540 GRVNMEENYA NIGQPPGGGN WACWGNAAAP PLPLVPNVAK SFQVNEGLKA EKNLRFLLQK 600 VLKQSDVGSL GRIVLPKKEA ETHLPQLTAR DGINIAMEDI GTSNVWNMRY RFWPNNKSRM 660 YLLENTGDFV KSNGLQEGDF IVIYSDIKCG KYMIRGVKVR QQGPRPDNRR SGKALKKNPS 720 STSNGASPSP NNTPHKETYL *

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MVTKAGVGLE EGGRRSDNLM HAAPPDAAEV DGDDVMVDLS CFGGYSSAEA AMEEADHQDL  60
MENAAAIFCD DLIPPLPDFQ CMSSSSSSSS STAVKPVAYR STASSSVSSS SSSWAVLRSD  120
GEEQHNTGGE CINNHQPQQV ALSSTASMEM YPQSGQSNRL DEGDDIGCMD VMETLSYMDL  180
LDENGQVWDY SDSPVFDCNR EEAFQCNREA ENQPQPPHAA AATASEFVHE KGDNSEGLDK  240
SEDLAMVFFE WLKSNKESVS AEDLRSIKLK KSTIETAAKR LGNGKEGMKR LLQLILEWVQ  300
QHQLQRKRRR EEEAAAAATM VGGQAGFPNQ PYPVQYPTQP FQSQDADFIN SNLQPDPVGF  360
TGAVNPPPWS VGSSAGFDHM VAVGVPAAGA GYVGGGDRFG HLSNMVDQPA ATPWPPAALP  420
FCMNYGDNSR SVQNLSPVAL QQAYPFGAGA FNQYPYQYYP AVGNGSTLNG PASDDGLART  480
GSSATKEARK KRMARQRRFS SHHRHHYHHH SSSSNSHGLH HVNNGQSNQM NMAVGTASPH  540
GRVNMEENYA NIGQPPGGGN WACWGNAAAP PLPLVPNVAK SFQVNEGLKA EKNLRFLLQK  600
VLKQSDVGSL GRIVLPKKEA ETHLPQLTAR DGINIAMEDI GTSNVWNMRY RFWPNNKSRM  660
YLLENTGDFV KSNGLQEGDF IVIYSDIKCG KYMIRGVKVR QQGPRPDNRR SGKALKKNPS  720
STSNGASPSP NNTPHKETYL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	1e-37	594	702	1	109	B3 domain-containing transcription factor FUS3
6j9b_D	1e-37	594	702	1	109	B3 domain-containing transcription factor FUS3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	309	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024550.1	1e-156	PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBL	R4TV46	1e-157	R4TV46_POPTO; ABI3
STRING	POPTR_0002s25330.1	1e-149	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	3e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0229s0041.1.p