PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0229s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 188aa    MW: 21326.5 Da    PI: 4.5764
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0229s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.91.2e-5230125297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr+lPianv+r+mk++lP nakisk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd++wal tlGf+dy+++lk yl+k+r
  Kalax.0229s0054.1.p  30 REQDRLLPIANVGRLMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDRCHKEKRKTVNGDDICWALDTLGFDDYADSLKRYLHKFR 119
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                           +ege+
  Kalax.0229s0054.1.p 120 VFEGER 125
                          ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-5226146IPR009072Histone-fold
SuperFamilySSF471133.26E-4032144IPR009072Histone-fold
PfamPF008084.4E-273599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-186381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.5E-1882100No hitNo description
PRINTSPR006153.5E-18101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDDYIIGAYA SRESFEYSFG GGNCEEGIIR EQDRLLPIAN VGRLMKQILP PNAKISKEAK  60
ETMQECVSEF ISFVTGEASD RCHKEKRKTV NGDDICWALD TLGFDDYADS LKRYLHKFRV  120
FEGERVTSQN RMGDKDEDQE EYEQPASSSY RYELPHLSDN INPNASNPAT MSTYNYGRSI  180
GSQLNNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4229119191Transcription factor HapC (Eurofung)
4g92_B3e-4229119191Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050837.22e-71PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO822484e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A061DQ999e-70A0A061DQ99_THECC; Nuclear transcription factor Y subunit B-5
STRINGEOX949942e-70(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]