PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0231s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 254aa    MW: 28054.6 Da    PI: 6.0792
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0231s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.14.5e-3671071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++C++apyf+ +q + +f +vh++FGasn +kll +lp + r+ a+ ++ yeA ar++dP+yG+v+++l lqqq+ q
  Kalax.0231s0036.1.p   7 SCGACKFLRRKCATECIFAPYFCYDQaAVHFSAVHRVFGASNFSKLLLHLPMHSRSVAAMTVSYEALARMHDPIYGCVAHVLLLQQQVVQ 96 
                          6************************9789************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e+++l+++
  Kalax.0231s0036.1.p  97 LEKEIEMLEKQ 107
                          *****999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7336108IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-337105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCAT ECIFAPYFCY DQAAVHFSAV HRVFGASNFS KLLLHLPMHS  60
RSVAAMTVSY EALARMHDPI YGCVAHVLLL QQQVVQLEKE IEMLEKQMAM AWFDISGAAA  120
PSSTQSANNF YGLHVETELD MDVRGYSNDQ QTSSQLLTAS ANAAAIDQRS REEKAWFLSP  180
DPMGQESFMH CYAESFAETL NTQGCTKSGP EWTKPVRTEG FRSGLWSINF QDSGFRSGPN  240
SENFGLDRSG PVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3131087111LOB family transfactor Ramosa2.1
5ly0_B4e-3131087111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.22e-60LOB domain-containing protein 29
RefseqXP_011002633.12e-60PREDICTED: LOB domain-containing protein 29-like
TrEMBLA0A2H5Q3626e-60A0A2H5Q362_CITUN; Uncharacterized protein
TrEMBLV4TGP26e-60V4TGP2_9ROSI; Uncharacterized protein
STRINGXP_006435636.11e-60(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-47LOB domain-containing protein 33