PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0232s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 302aa    MW: 32750.1 Da    PI: 7.6652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0232s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-125197555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         h + Er RR+++   f  L  l+P++     +K +Ka+i+e Av Y++sL+
  Kalax.0232s0023.1.p 51 HIQTERERRRKMSGMFGALHALIPHL----PPKTDKATIVESAVSYVRSLE 97
                         8899*********************6....39****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-1444107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.314696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1351110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-95197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.04E-1251101No hitNo description
SMARTSM003533.3E-952102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
LSLWGAGGEE VEKGNGSAKR EELRKAVAGG GEKGEDEGAA AAAEEQQVEL HIQTERERRR  60
KMSGMFGALH ALIPHLPPKT DKATIVESAV SYVRSLEERL QILQHRKQEK IEQAKNGVGF  120
NPFPPSPSSM IPLQPHPPPY EPMALPADHH LHSSASSRSI TPPNSNPTTP TTHNAPGSPI  180
MMLNPNSNSS SSPRETSVKL TLSPSSVMFR TFTSKNVVLC VCGEEASFNI CGARRPGFYT  240
GIASVLDKYR LEVKSCHISS DPQSNRTTLM IQAQATALLD QYPAEEIYKR AAVEMVQVVS  300
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-20bHLH family protein