PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0236s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 701aa    MW: 75866.8 Da    PI: 6.7575
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0236s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.4e-162468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Kalax.0236s0017.1.p 24 RERWTEEEHSKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.95E-171874IPR009057Homeodomain-like
PROSITE profilePS5129419.7511973IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-82167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-162271IPR006447Myb domain, plants
SMARTSM007171.7E-122371IPR001005SANT/Myb domain
PfamPF002495.1E-132467IPR001005SANT/Myb domain
CDDcd001671.04E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDLCSSGEEL VIKSRKPYTI SKQRERWTEE EHSKFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFL KLEKDASGKG VLISEVHHID IPPPRPKKKP NNPYPRKISV VVPTVTVEAK  120
DGKISIPISS CPVKQVQEPH NGVLQEKPGG KETLDTSCTS VSLSHHVEKM HEGEPNQHPD  180
QDGTELTTMR KDSSENRNLE MLQASPDSVV QCVNLKWDKS QTCSTQASTE ATQSYPGKVP  240
VNAVGSSPEP FRLSSHPFFY QFLPDQLGGT AFSPNDFTSS DASATREPKC PSEMIGPSNS  300
PITPFFLNHE DAYRAYLQFS SAFSNLVVST LQQNPAAYAA AGVAAASFWP NINAEAPAGY  360
CGGFPMKVMD TGGASPSITA ITAATVAAAT AWWASNGLIP FCASQQSLTH SQSCFTTNNV  420
VPHAAARTRT VTDEKSHQDP TVSQDQQAEV VNSPTFPGRN SAFKPLTIVL EKSEENQVMV  480
MDKQVPPTAV ISKNKSAAMD VEIQGSNTDL KDGKKLDRSS SGSNTTSSTE LEETDVLEKH  540
DSGNEESNAP DDAHSIGDSS NRRGRNGRVA FQALFSRQVL PQKFSSSAGL VTLETHANTD  600
QESKLELGGV ASPIDLNSDI LVSCSADGVV KTNGKVRAEC EGQEILHSIG VGKLRTHKTG  660
FKPYKRSSVE PKDISVPNCC SQGKDKRLKR MCLEGGEASA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787180.0KM078718.1 Kalanchoe fedtschenkoi isolate 2 circadian clock-associated 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A089YMJ30.0A0A089YMJ3_KALFE; Circadian clock-associated 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.32e-39MYB_related family protein