PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0236s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 421aa    MW: 46749.3 Da    PI: 5.2587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0236s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19149199155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+ +++g
  Kalax.0236s0040.1.p 149 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAALAYDEAAIAMYG 199
                          56*****999.**********8...3.35***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-32149208No hitNo description
PfamPF008471.7E-14149199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31150208IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21150209IPR016177DNA-binding domain
SMARTSM003801.9E-37150213IPR001471AP2/ERF domain
PROSITE profilePS5103222.431150207IPR001471AP2/ERF domain
PRINTSPR003671.4E-10151162IPR001471AP2/ERF domain
PRINTSPR003671.4E-10173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRDGASGKF EPHALKIEPY LINTLRLRKF SIFLKHNDIS RTLSKQRLAQ EKSSDAGENQ  60
ILGFVHRFWT SIQRLMACAE FMSAGGNLHK MKTRIRKRTG TKPVAETIAK WKQYNKKLDS  120
EGNPIRRVPA KGSKKGCMKG KGGPENYHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF  180
PTAEEAALAY DEAAIAMYGP CARLNMPDRV VKKHDSEENS KDSSTVISTC CSESMSTASN  240
NSDALREDSA ERHYQSKLVM PKLEKVARSS VPNPDVPCLT DEAASSNLEA ESRNDPAVSM  300
DANQGDGVND WLQTQSYSMD ELFDAQELLA EIENNPLERD ARQDEGHPPS TDLFSVLNDD  360
NTQCMGSVDL AGQPLNPDAG LFEGIDVGLL GDGLDLSFLE PGRQEDEAPF DYCSFFDLDL  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-19150210263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-33ERF family protein