PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0236s0045.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 146aa MW: 15945.1 Da PI: 5.9563

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0236s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.5	8e-18	1	56	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l+++p ++r da+sslv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e Kalax.0236s0045.1.p 1 MLQDIPVHQRGDAVSSLVFEANARLRDPVYGCVGAISYLQNQVSQLQRQLAVAQAE 56 7999************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.818	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-16	1	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MLQDIPVHQR GDAVSSLVFE ANARLRDPVY GCVGAISYLQ NQVSQLQRQL AVAQAEILCI 60 QMQQDIQPVA LPVQPPPLPA DVMSISLPSQ QPHQLLVDDK SFVFSNSNLS QLMLNYSSTS 120 ASSNVIHHHG YSAPALNKER ESLWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-19	1	73	55	128	LOB family transfactor Ramosa2.1
5ly0_B	3e-19	1	73	55	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241428.1	3e-42	PREDICTED: LOB domain-containing protein 12-like
TrEMBL	A0A166BZK4	6e-41	A0A166BZK4_DAUCS; Uncharacterized protein
STRING	XP_010692935.1	6e-39	(Beta vulgaris)
STRING	XP_010257046.1	5e-39	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-36	LBD family protein

Link Out ? help Back to Top
Phytozome	Kalax.0236s0045.1.p