PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0237s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 254aa    MW: 26546.8 Da    PI: 4.6748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0237s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014143164223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp C+++F +   +  H+r+H
  Kalax.0237s0011.1.p 143 PCPLCNRVFDSYPAMFGHQRVH 164
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.995142169IPR007087Zinc finger, C2H2
SMARTSM003550.0093142164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLQNPLSAIS IIVSASLCHQ TLSSFSNLIM AGDDQPGKRA VAAGDKTALE EGEIPEEEEE  60
IQQPPPSPTP PPPVVVTTSA PPPSPPPVKK FKVVGSSSTT AGGGAGGSHS GDGRVAAAPA  120
PPPPPPPPPP APHVRPPPGL QVPCPLCNRV FDSYPAMFGH QRVHKDRPYR GAYPPPTFNR  180
EGSPPTAEEI EEAARVAAQM LLDMSKGQWA SSSSARGVNI DLNIPLLSEE EEEAKEGKMP  240
DLDLNKSPPK DEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-13C2H2 family protein