PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0237s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27341.6 Da    PI: 9.6095
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0237s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.67e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien+  rqvtfskRr+g+lKKA+ELS+LCda+v v+ifsstgkly+y+s
  Kalax.0237s0013.1.p  9 KRIENTNSRQVTFSKRRKGLLKKAKELSILCDAQVGVMIFSSTGKLYDYAS 59
                         79***********************************************86 PP
2K-box78.32e-26881751198
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++  + +++e+a L++++++Lq+ +R++  e+L sL++keLq+Le+qLe  lk iR kK+e+++++i+el++k   +q+en +L+++ 
  Kalax.0237s0013.1.p  88 KSPLQFWKNEVATLQQQLQSLQEDHRKVFTEELASLTIKELQHLENQLEMNLKCIRMKKDEIMMAKIDELRQKGSLIQQENLDLHNQA 175
                          56689*******************************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-29281IPR002100Transcription factor, MADS-box
CDDcd002658.02E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.6E-2391174IPR002487Transcription factor, K-box
PROSITE profilePS5129713.37891182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIVIKR IENTNSRQVT FSKRRKGLLK KAKELSILCD AQVGVMIFSS TGKLYDYASK  60
ASIKATIEEY NKLKGDPLHP ANPSSEVKSP LQFWKNEVAT LQQQLQSLQE DHRKVFTEEL  120
ASLTIKELQH LENQLEMNLK CIRMKKDEIM MAKIDELRQK GSLIQQENLD LHNQAMCHIK  180
NIQVHDMRAP NVVKAAPLYM DNVCGENGTP VHVQLQLRQP QPQPQSNELA SGNVIVGLHL  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18191188MEF2C
5f28_B6e-18191188MEF2C
5f28_C6e-18191188MEF2C
5f28_D6e-18191188MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623536.14e-80MADS-box transcription factor 23 isoform X1
RefseqXP_028204325.14e-80MADS-box transcription factor 23-like isoform X2
TrEMBLA0A0R0FWL79e-79A0A0R0FWL7_SOYBN; Uncharacterized protein
STRINGGLYMA13G32810.17e-79(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-71AGAMOUS-like 16