PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0237s0013.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 22584.2 Da    PI: 10.071
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0237s0013.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien+  rqvtfskRr+g+lKKA+ELS+LCda+v v+ifsstgkly+y+s
  Kalax.0237s0013.2.p  9 KRIENTNSRQVTFSKRRKGLLKKAKELSILCDAQVGVMIFSSTGKLYDYAS 59
                         79***********************************************86 PP
2K-box57.56e-2082146973
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                          + +++ + +++e+a L++++++Lq+ +R++  e+L sL++keLq+Le+qLe  lk iR kK + +
  Kalax.0237s0013.2.p  82 NPSSEVKFWKNEVATLQQQLQSLQEDHRKVFTEELASLTIKELQHLENQLEMNLKCIRMKKVHDM 146
                          5678899******************************************************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-30291IPR002100Transcription factor, MADS-box
CDDcd002653.73E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1784144IPR002487Transcription factor, K-box
PROSITE profilePS512979.29187180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKIVIKR IENTNSRQVT FSKRRKGLLK KAKELSILCD AQVGVMIFSS TGKLYDYASK  60
ASIKATIEEY NKLKGDPLHP ANPSSEVKFW KNEVATLQQQ LQSLQEDHRK VFTEELASLT  120
IKELQHLENQ LEMNLKCIRM KKVHDMRAPN VVKAAPLYMD NVCGENGTPV HVQLQLRQPQ  180
PQPQSNELAS GNVIVGLHLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18187184MEF2C
5f28_B3e-18187184MEF2C
5f28_C3e-18187184MEF2C
5f28_D3e-18187184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172970.12e-71PREDICTED: MADS-box transcription factor 27-like isoform X12
SwissprotQ6EP491e-59MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PF717e-67A0A1U8PF71_GOSHI; MADS-box transcription factor 23-like isoform X6
STRINGGLYMA13G32810.15e-65(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-61AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]