PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0239s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 531aa MW: 59460.8 Da PI: 6.4053

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0239s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.9	5.3e-20	424	472	2	50
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +++++e++s yF+l++++AAk+Lg+++T +K+ CR++ ++RWP+Rk+ Kalax.0239s0019.1.p 424 AANLTVEEVSGYFHLTLTKAAKQLGISATFVKKFCRRHRMPRWPYRKVV 472 579********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.971	407	495	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-18	426	471	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MNSSFDVDKL EMRVSCLENP CNNFIVSETS IFPTKQHRDG VGHHQLITPS IFLFLPPTCN 60 LATTSVYMMD PYSSPIPNST ISASTRLQAQ SAHSVFYQRS VTVTNYRRLS DKIQNSKNVS 120 ATCSVNLTQL PPPLRCSRFR LHPAIDGAFD SVMADHSIDD FINFDLDQID IYEFLNSDPP 180 LITQPSNQQE VHEDAIGDTI DPMDDPFVQS LFGTWSNEDA SGSETKDMNK GQDDRSFPVS 240 EEFEFWSVPA APTSCSFCQV LREIVHTNGI YSTKLEIHGR VGMICHAILV TQISSGELTH 300 QMLNLSKKSI EGVKEFLVQY CRSKKQAGFV LVSDPMAPFY EALCVGLDLS DNFGYSDDEA 360 DPPPGHGCGA TNNHQAYGEA ANQTSSSLPR SGPTRKSHQA ALKAANQTSS SDTRTWYQKQ 420 RDRAANLTVE EVSGYFHLTL TKAAKQLGIS ATFVKKFCRR HRMPRWPYRK VVEVEPNLSS 480 PSIKCNESRI SELREVLQRT IYVNQQRQIE AEIARLQRGV EEIYIRFRAS *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MNSSFDVDKL EMRVSCLENP CNNFIVSETS IFPTKQHRDG VGHHQLITPS IFLFLPPTCN  60
LATTSVYMMD PYSSPIPNST ISASTRLQAQ SAHSVFYQRS VTVTNYRRLS DKIQNSKNVS  120
ATCSVNLTQL PPPLRCSRFR LHPAIDGAFD SVMADHSIDD FINFDLDQID IYEFLNSDPP  180
LITQPSNQQE VHEDAIGDTI DPMDDPFVQS LFGTWSNEDA SGSETKDMNK GQDDRSFPVS  240
EEFEFWSVPA APTSCSFCQV LREIVHTNGI YSTKLEIHGR VGMICHAILV TQISSGELTH  300
QMLNLSKKSI EGVKEFLVQY CRSKKQAGFV LVSDPMAPFY EALCVGLDLS DNFGYSDDEA  360
DPPPGHGCGA TNNHQAYGEA ANQTSSSLPR SGPTRKSHQA ALKAANQTSS SDTRTWYQKQ  420
RDRAANLTVE EVSGYFHLTL TKAAKQLGIS ATFVKKFCRR HRMPRWPYRK VVEVEPNLSS  480
PSIKCNESRI SELREVLQRT IYVNQQRQIE AEIARLQRGV EEIYIRFRAS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0239s0019.1.p