PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0239s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 377aa MW: 42805.6 Da PI: 8.448

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0239s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.9e-11	91	131	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + +rr+++NReAAr+sR+RKka++++Le +L++ ++L Kalax.0239s0032.1.p 91 QSQRRRAQNREAARKSRLRKKAYVQQLESSRLKLSQLEEEL 131 789*************************9777777666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-7	85	133	No hit	No description
SMART	SM00338	1.6E-7	87	150	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.726	89	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.01E-7	91	133	No hit	No description
Pfam	PF00170	1.5E-7	91	131	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	94	109	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.5E-29	180	253	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MICAQFSNLL LGMSSTSTEF ATSRRSMGIY DPLHQMNMWK DTYVRPQTNI NTSEAILVPL 60 SDNKMKGDYS PRESFENLRT NLETSKPPEK QSQRRRAQNR EAARKSRLRK KAYVQQLESS 120 RLKLSQLEEE LERARSQGAY IGSALDSSHV GLFATVNPGV AAFEMEYAHW VEEQHEQTLE 180 LRNALQAQTI SDVKLKTLVD TSLIHYDNLF QKKGDAAKAD VFYLMSGMWR TPAERFFLWI 240 GGFRPSELLN VLMPQLEPLS EQQHQSISKL RQSSQQAEDA LSQGIDRLKQ TLSQSIAAPT 300 VGEGCYLSQM ICEIEKLDAL ENFVSQADHL RQKTLQHMSR ILTTRQAALG LLALGEFFHR 360 FRALSSLWAA RALEPF*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MICAQFSNLL LGMSSTSTEF ATSRRSMGIY DPLHQMNMWK DTYVRPQTNI NTSEAILVPL  60
SDNKMKGDYS PRESFENLRT NLETSKPPEK QSQRRRAQNR EAARKSRLRK KAYVQQLESS  120
RLKLSQLEEE LERARSQGAY IGSALDSSHV GLFATVNPGV AAFEMEYAHW VEEQHEQTLE  180
LRNALQAQTI SDVKLKTLVD TSLIHYDNLF QKKGDAAKAD VFYLMSGMWR TPAERFFLWI  240
GGFRPSELLN VLMPQLEPLS EQQHQSISKL RQSSQQAEDA LSQGIDRLKQ TLSQSIAAPT  300
VGEGCYLSQM ICEIEKLDAL ENFVSQADHL RQKTLQHMSR ILTTRQAALG LLALGEFFHR  360
FRALSSLWAA RALEPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285820.1	1e-160	PREDICTED: transcription factor TGA4
Refseq	XP_010664271.1	1e-160	PREDICTED: transcription factor TGA4
Refseq	XP_010664272.1	1e-160	PREDICTED: transcription factor TGA4
Refseq	XP_010664273.1	1e-160	PREDICTED: transcription factor TGA4
Refseq	XP_019072140.1	1e-160	PREDICTED: transcription factor TGA4
Swissprot	Q39237	1e-140	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A385ZA14	1e-159	A0A385ZA14_9ROSI; BZIP1 (Fragment)
STRING	VIT_18s0001g04470.t01	1e-160	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-119	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0239s0032.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]