PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0241s0052.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26737 Da PI: 7.071

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0241s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	75	129	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R++++++ql++Le+ F+++ ++ +++ LA++l+L+ rqV +WFqNrRa+ k Kalax.0241s0052.1.p 75 KRRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 129 8999*************************************************88 PP
2	HD-ZIP_I/II	103.9	1.4e-33	76	166	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ++rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l e+++L++ev+ L++ l Kalax.0241s0052.1.p 76 RRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQHEVHILQTLL 165 89***********************************************************************************99877 PP HD-ZIP_I/II 92 k 92 k Kalax.0241s0052.1.p 166 K 166 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-19	45	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-19	60	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.091	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.4E-16	74	135	IPR001356	Homeobox domain
CDD	cd00086	6.66E-16	75	132	No hit	No description
Pfam	PF00046	1.0E-16	75	129	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MEWSLPIAEA NPSSSTNLPF SVSATNNHYP LMPYYPSFNF NHHHPHDHSA ASPEMETREI 60 TDMESSGNRQ SEEAKRRRRI SADQLKTLEK SFQEEAKLRP AKKVSLAREL NLEPRQVAIW 120 FQNRRARVKS KNLEKMYDEL REQFNVLYLE KQKLQHEVHI LQTLLKRQVC CNQHVSTYEE 180 ISVDNTSATA ALPAAPLADF YSVGEAGERF QTPHGLPSCT QGTPAWAAQL PPEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	79	KRRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-31	homeobox 51

Link Out ? help Back to Top
Phytozome	Kalax.0241s0052.1.p