PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0243s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 1760aa MW: 196454 Da PI: 5.0934

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0243s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.7	3.5e-17	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle Le+ ++ + yps++ r++L+ klgL++rq ++WF+ rR k+kk Kalax.0243s0027.1.p 21 KSKRKMKTAFQLELLEKTYAVETYPSEAVRADLSVKLGLSDRQLQMWFCHRRLKDKK 77 679****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-16	7	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-15	13	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	18	78	IPR001356	Homeobox domain
SMART	SM00389	2.5E-14	20	82	IPR001356	Homeobox domain
CDD	cd00086	3.08E-13	21	78	No hit	No description
Pfam	PF00046	1.1E-14	21	77	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.609	556	615	IPR018501	DDT domain
SMART	SM00571	1.4E-18	556	615	IPR018501	DDT domain
Pfam	PF02791	3.4E-16	557	612	IPR018501	DDT domain
Pfam	PF05066	7.1E-13	737	804	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.0E-7	952	990	IPR028942	WHIM1 domain
Pfam	PF15613	6.8E-13	1127	1199	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1760 aa Download sequence Send to blast
MEEVIEEKKE QMSTPQDGDS KSKRKMKTAF QLELLEKTYA VETYPSEAVR ADLSVKLGLS 60 DRQLQMWFCH RRLKDKKTPA LTTKRQKKDS PGEGAAGTSY SGVGDELAAS SEAGGEHFPV 120 IGLGSGATTF GHGRAVPRNC GVALARIGSD LPPVKRYYET PEAVREMRAI AFVEAQLGEP 180 LREDGPILGM DFDPLPPDAF GAPLGTGEQQ KHSGRSYDMK IFDRTDFKLP KAASGTLHEY 240 QFLPEQPTMR AETYERGNPS HYYVSPPDAP SLRTSSLSAG RIMHGAEFPI GYGFQNQIPS 300 VHFLHQQVRT GHLASSAAGE YETVPRKSSL PNLVDPLFGT APVNMLETPL LSSDRRLAVE 360 EGASRLERKR KSDEARIAKE LEANEKRIRK ELEKQDLLRR KKEEQMKKDM ERQDRERRKE 420 EERILREKQR EEERFQKEQR RELERREKFL QKESMRAEKL RQKEELRRER EAARLKAAND 480 RAIARRIAKE SMELIEDERL ELMELAASMK GLPSLLSLDY ETLQSLETYR DMLPVFPPKT 540 IKLKKPFAFP PWADSEENVG NLLMAWKFLQ TFADILGLWP FSLDEFLQAF HDYDPRLLGE 600 IHIAILKCII KDIEDVARTP STGLGSNQYS ATIPGGGHPQ IVEGAYAWGF DIKSWQRHLN 660 PLTWPEILRQ LALSAGFGPK LKKTNIESSH RDDQEGNNCE AIISKLRNGT AAENAVALMN 720 EKGYSNSRRS RHRLTPGTVK FAAFHILSLE GSKGITILEV ADKIQKSGLR DLTTSRTPEA 780 SIAAALSRDT TLFERTAPST YCVRPTYRKD PADAEAILSA AREKIRLFKS GLPDAEEVDD 840 VERDEDSDSD VAEDPEAEDL CNDPITKTDV QKDSKGVGLP STSTLSNGNE APIASGGTSE 900 AFNELSSTHS EVLNERKHDF ACFNETVNGL GRGDEASPPY LDDMDLDEGY SGEPWVQGLV 960 TGEYSNLSVE ERLHAVVALV GLAIEGNSIR LVLEERLEAA NTLKKQMWAE AQVDKRRVRD 1020 DCVLKVHCPS SGGRSEVGTP NIATEAKRSP VASLNDHGNE ILISQPDYGD SHVNNSHYGN 1080 ISSNPIQDST FGPDNIQIQL SGYTYERSRS QLKSVIGQKA EDTYVYRSLP LGQDRRRNRY 1140 WQFITSVSTN EPGCSRIFVE LRDGRWRLID DKQDFDTLVA SLDARGTREA HLYSMLQKVQ 1200 TSFKGNINWK LHPDVGNLLK LECRESNSHP DADGPSSGVC LSNSDLETSS SFAIELGKNE 1260 DERSNALTRY QDFQKWVWSE CFSSSNFCAL RHGGKRATQL LGICEKCYDS YFFEDKHCPF 1320 CHGTFRYSDC SLGFADHVAQ CEHNLQMEPY EIVYPSVSLP LRARLLKVML ALVEVSVPSE 1380 ALHSVWTETQ RLEWGAKLNN SVSSEDLLQV LTVLESIIPR DYLSPNFETT NEILGACKAS 1440 DLDKGYGSVR LLPWIPKTTA AVALRLMELD TAIYYTQQLK LESEKEEAGN YMLPSKYDDS 1500 RKLQDVFTPT PYEIPNVLEN RVDHGASQGG SSKRKRGNGN SGRTGSDRSR RKVSSSKSDT 1560 VHKTVPASNG PLGQMLGWKG AAVGGGRRQG RRTARTRHRP GKSVMEINNE RSSLNFVPVK 1620 PLENTAGGSD RNEWNAEMQA TENDVNDVGS SSSSEYDEDT GPAMVGEEYD NMAAVDDYPD 1680 VYNRQSQEFN EASEDEYGDH GVEAEGEEEE QGDLDVGRYI NEYSDEDEGE GNGDANAGVN 1740 YMLDDPAATG SSSSADYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1760 aa Download sequence Send to blast

MEEVIEEKKE QMSTPQDGDS KSKRKMKTAF QLELLEKTYA VETYPSEAVR ADLSVKLGLS  60
DRQLQMWFCH RRLKDKKTPA LTTKRQKKDS PGEGAAGTSY SGVGDELAAS SEAGGEHFPV  120
IGLGSGATTF GHGRAVPRNC GVALARIGSD LPPVKRYYET PEAVREMRAI AFVEAQLGEP  180
LREDGPILGM DFDPLPPDAF GAPLGTGEQQ KHSGRSYDMK IFDRTDFKLP KAASGTLHEY  240
QFLPEQPTMR AETYERGNPS HYYVSPPDAP SLRTSSLSAG RIMHGAEFPI GYGFQNQIPS  300
VHFLHQQVRT GHLASSAAGE YETVPRKSSL PNLVDPLFGT APVNMLETPL LSSDRRLAVE  360
EGASRLERKR KSDEARIAKE LEANEKRIRK ELEKQDLLRR KKEEQMKKDM ERQDRERRKE  420
EERILREKQR EEERFQKEQR RELERREKFL QKESMRAEKL RQKEELRRER EAARLKAAND  480
RAIARRIAKE SMELIEDERL ELMELAASMK GLPSLLSLDY ETLQSLETYR DMLPVFPPKT  540
IKLKKPFAFP PWADSEENVG NLLMAWKFLQ TFADILGLWP FSLDEFLQAF HDYDPRLLGE  600
IHIAILKCII KDIEDVARTP STGLGSNQYS ATIPGGGHPQ IVEGAYAWGF DIKSWQRHLN  660
PLTWPEILRQ LALSAGFGPK LKKTNIESSH RDDQEGNNCE AIISKLRNGT AAENAVALMN  720
EKGYSNSRRS RHRLTPGTVK FAAFHILSLE GSKGITILEV ADKIQKSGLR DLTTSRTPEA  780
SIAAALSRDT TLFERTAPST YCVRPTYRKD PADAEAILSA AREKIRLFKS GLPDAEEVDD  840
VERDEDSDSD VAEDPEAEDL CNDPITKTDV QKDSKGVGLP STSTLSNGNE APIASGGTSE  900
AFNELSSTHS EVLNERKHDF ACFNETVNGL GRGDEASPPY LDDMDLDEGY SGEPWVQGLV  960
TGEYSNLSVE ERLHAVVALV GLAIEGNSIR LVLEERLEAA NTLKKQMWAE AQVDKRRVRD  1020
DCVLKVHCPS SGGRSEVGTP NIATEAKRSP VASLNDHGNE ILISQPDYGD SHVNNSHYGN  1080
ISSNPIQDST FGPDNIQIQL SGYTYERSRS QLKSVIGQKA EDTYVYRSLP LGQDRRRNRY  1140
WQFITSVSTN EPGCSRIFVE LRDGRWRLID DKQDFDTLVA SLDARGTREA HLYSMLQKVQ  1200
TSFKGNINWK LHPDVGNLLK LECRESNSHP DADGPSSGVC LSNSDLETSS SFAIELGKNE  1260
DERSNALTRY QDFQKWVWSE CFSSSNFCAL RHGGKRATQL LGICEKCYDS YFFEDKHCPF  1320
CHGTFRYSDC SLGFADHVAQ CEHNLQMEPY EIVYPSVSLP LRARLLKVML ALVEVSVPSE  1380
ALHSVWTETQ RLEWGAKLNN SVSSEDLLQV LTVLESIIPR DYLSPNFETT NEILGACKAS  1440
DLDKGYGSVR LLPWIPKTTA AVALRLMELD TAIYYTQQLK LESEKEEAGN YMLPSKYDDS  1500
RKLQDVFTPT PYEIPNVLEN RVDHGASQGG SSKRKRGNGN SGRTGSDRSR RKVSSSKSDT  1560
VHKTVPASNG PLGQMLGWKG AAVGGGRRQG RRTARTRHRP GKSVMEINNE RSSLNFVPVK  1620
PLENTAGGSD RNEWNAEMQA TENDVNDVGS SSSSEYDEDT GPAMVGEEYD NMAAVDDYPD  1680
VYNRQSQEFN EASEDEYGDH GVEAEGEEEE QGDLDVGRYI NEYSDEDEGE GNGDANAGVN  1740
YMLDDPAATG SSSSADYSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275272.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2I4F9F2	0.0	A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_002517852.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kalax.0243s0027.1.p