PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0246s0002.5.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 974aa MW: 108918 Da PI: 9.5246

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0246s0002.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E +++++a +++G++ Wk++a + R+ +++ Kalax.0246s0002.5.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAGAVR-SRSVEMV 80 6***************99.****999.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.26E-9	44	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-4	45	79	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-6	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-4	46	80	No hit	No description
SMART	SM01135	6.9E-59	583	684	IPR033471	DIRP domain
Pfam	PF06584	1.6E-32	583	683	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MAPSRKNGNA NKQSPSANKV VAKKDEEDVK TKLKKRKLGD MLGSQWSNKE LQQFYEAYRK 60 YGTNWKKVAG AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLVAMVTDH YSVMERSDSE 120 QESNEGREAP QRAQKRSRRK IRSSTFKDVD HNLPDHSPSR FVESSSDCLS LLKANLPGSE 180 PRVVGKRTPR VPVVHSSDRD FGDKYFSAKP GRKVKMDADD HVAHEIALAL TKSSQKDKSP 240 RVSQSNRVSQ RKIRNVLSPA KNDDRMGTSA QLRGSARDEQ DHEGSMGSIG TDVDSLRRGS 300 NLRVREGVGT ADIQRKGKRF HGKKAFAEIG NEYLDDLKEA CSGTEEQNSG ALNKKRGFEI 360 PKQLLPKGLK KRSKKILFDE DESDAFEALN TLADLSLTMP EPYLDNDNRG ADINSSSAKL 420 KGKISLGGDE DITIKFGSER GASVGTIPDA EDKTGLWKRK KKPLPFCMEN SKMEPHLYHT 480 ENLQNNEDVE DVNKSLGKDY HKEGEHARAS TLHVSRDSEG DSSSKNRNRR KRDLPKSVNC 540 KDTNSSVQVE SGRPIDGIVN LKAKLAKCLS WRKAQRWCTF EWFYSAIDYP WFARREFVEY 600 LDHVGLGHIP RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNQYRESVR NHYTELRLGA 660 REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSILTVDRSR CHVQFDKPDL GVEFVMDIDC 720 MPLNPLENMP ASLAINKLSE NHCGVKLNGL ASHHSASVQF NPNGNVDNSD GPVLRPLSDS 780 VVGNSTKTMR DEIAAGNVQA KARVGSISEQ QAADQPLILA QSKEADVKAL YEMTCVLDKK 840 EAIVSELKRM NDEVEENKRR DSSFEVPELF SKRYASVLVQ LDEVNDQVTF ALRCLRQRNT 900 YQGSFGLITT KPALDDVGVL SCTLNNSTSD PSKQETHVPE IAEGSRSKAQ KMVNAAMQVL 960 RLMTFQNCML LLS*

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MAPSRKNGNA NKQSPSANKV VAKKDEEDVK TKLKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAG AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLVAMVTDH YSVMERSDSE  120
QESNEGREAP QRAQKRSRRK IRSSTFKDVD HNLPDHSPSR FVESSSDCLS LLKANLPGSE  180
PRVVGKRTPR VPVVHSSDRD FGDKYFSAKP GRKVKMDADD HVAHEIALAL TKSSQKDKSP  240
RVSQSNRVSQ RKIRNVLSPA KNDDRMGTSA QLRGSARDEQ DHEGSMGSIG TDVDSLRRGS  300
NLRVREGVGT ADIQRKGKRF HGKKAFAEIG NEYLDDLKEA CSGTEEQNSG ALNKKRGFEI  360
PKQLLPKGLK KRSKKILFDE DESDAFEALN TLADLSLTMP EPYLDNDNRG ADINSSSAKL  420
KGKISLGGDE DITIKFGSER GASVGTIPDA EDKTGLWKRK KKPLPFCMEN SKMEPHLYHT  480
ENLQNNEDVE DVNKSLGKDY HKEGEHARAS TLHVSRDSEG DSSSKNRNRR KRDLPKSVNC  540
KDTNSSVQVE SGRPIDGIVN LKAKLAKCLS WRKAQRWCTF EWFYSAIDYP WFARREFVEY  600
LDHVGLGHIP RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNQYRESVR NHYTELRLGA  660
REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSILTVDRSR CHVQFDKPDL GVEFVMDIDC  720
MPLNPLENMP ASLAINKLSE NHCGVKLNGL ASHHSASVQF NPNGNVDNSD GPVLRPLSDS  780
VVGNSTKTMR DEIAAGNVQA KARVGSISEQ QAADQPLILA QSKEADVKAL YEMTCVLDKK  840
EAIVSELKRM NDEVEENKRR DSSFEVPELF SKRYASVLVQ LDEVNDQVTF ALRCLRQRNT  900
YQGSFGLITT KPALDDVGVL SCTLNNSTSD PSKQETHVPE IAEGSRSKAQ KMVNAAMQVL  960
RLMTFQNCML LLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023908919.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_023908920.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_023908921.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_023908922.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A2I4F338	0.0	A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
STRING	cassava4.1_000519m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Kalax.0246s0002.5.p