PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0247s0046.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27164.1 Da PI: 9.7449

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0247s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.3	5.3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl++y++ Kalax.0247s0046.1.p 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFDYAT 59 79***********************************************86 PP
2	K-box	97.3	2.3e-32	83	174	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + s++ e+a+Lk++ie L+++qRh++GedL+ L lkeLq+Le+qL+++lk+iR+kK++l++e+i+elqkk k+l+e+n+ L k++ Kalax.0247s0046.1.p 83 TDTESNGSWHLEHARLKARIEALEKKQRHYMGEDLDLLILKELQNLENQLDNALKHIRAKKSQLMFESISELQKKDKQLHEQNTLLAKQM 172 56677889********************************************************************************99 PP K-box 99 ee 100 +e Kalax.0247s0046.1.p 173 KE 174 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.338	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.7E-40	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.41E-40	2	79	No hit	No description
SuperFamily	SSF55455	8.63E-33	2	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-31	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.0E-26	86	172	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	16.425	88	178	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFDYATD 60 SCMDRILERH ERYSSAERQL IPTDTESNGS WHLEHARLKA RIEALEKKQR HYMGEDLDLL 120 ILKELQNLEN QLDNALKHIR AKKSQLMFES ISELQKKDKQ LHEQNTLLAK QMKEREKSQG 180 MDQQSHIQPP LEASTGIGGG NYIYQGARDH GGTASSALHL TTTTLLPQWM LMSRLGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
1tqe_R	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
1tqe_S	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6byy_A	2e-22	1	84	1	83	MEF2 CHIMERA
6byy_B	2e-22	1	84	1	83	MEF2 CHIMERA
6byy_C	2e-22	1	84	1	83	MEF2 CHIMERA
6byy_D	2e-22	1	84	1	83	MEF2 CHIMERA
6c9l_A	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6c9l_B	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6c9l_C	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6c9l_D	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6c9l_E	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
6c9l_F	2e-22	1	84	1	83	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973950.1	1e-103	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
Swissprot	Q42429	1e-100	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A1S3YGF6	1e-101	A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
TrEMBL	G9FV52	1e-101	G9FV52_LITCN; APETALA1-like protein
STRING	XP_009625854.1	1e-102	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	5e-94	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0247s0046.1.p

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]