PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0250s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 290aa MW: 32066.8 Da PI: 6.7508

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0250s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Kalax.0250s0032.1.p 110 FSCNYCQRKFYSSQALGGHQNAH 132 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	107	137	No hit	No description
PROSITE profile	PS50157	11.427	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MYSLMEEPRA EPSPSETSSI ISTTDGITPP QVLLQKTPYP GQILCVEDDD NEDHRERGNE 60 RKSAIQLDLY NSAGNTTNQE LNLIDNLDME SMHTSSMTSQ PPDGAEPRVF SCNYCQRKFY 120 SSQALGGHQN AHKRERTIAK RGQRLGTSMM AAATAFGHAY LQPHHHLSSL SALPIHGAYN 180 RSLGIQVHSM IQKPAYSQNT MMSGHPYGHR NWTRQPIEQQ PAVGKLSMEI INQTSGVTGS 240 TSKFHTPKFE TLNTDLPTDH IIGGCWWPGG GISKPDQEDL QKLDLSLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282938.1	1e-87	PREDICTED: zinc finger protein 3-like
TrEMBL	F6H3J5	3e-86	F6H3J5_VITVI; Uncharacterized protein
STRING	VIT_04s0008g05930.t01	5e-87	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-47	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0250s0032.1.p