PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0252s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bZIP
Protein Properties Length: 174aa    MW: 19511.9 Da    PI: 7.5079
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0252s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.4e-132984560
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                         ++ +r+q+NRe+ArrsR RK++ ++ L+  v ++ +eN++    +   ++++ +++
  Kalax.0252s0018.1.p 29 RKRKRMQSNRESARRSRMRKQKHLDDLTAQVNQIRKENHQIMTSIGVTNQQYLNVE 84
                         6789***********************************99988888777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-162589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.32786IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-102773No hitNo description
PfamPF001701.6E-102976IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-122981No hitNo description
CDDcd147024.79E-203080No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MATSSGNSIS TAQIQQSAGS EEVGVMDQRK RKRMQSNRES ARRSRMRKQK HLDDLTAQVN  60
QIRKENHQIM TSIGVTNQQY LNVEAESCIL RAQMCELKQR LQSLNQIIHC INTTPSPPLA  120
PASTIATSFD IGVFDYGFGD DDDFLQTGFI NPWNNMGYIN QQPIMASADM FQH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKRKRMQSNRESARRSRMRKQK
24148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466147.16e-54bZIP transcription factor 11
SwissprotC0Z2L51e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A072VF031e-52A0A072VF03_MEDTR; BZIP transcription factor bZIP124
STRINGMigut.C00766.1.p8e-53(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-41basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]