PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0252s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 300aa MW: 33863.1 Da PI: 6.2614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0252s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.3	2e-46	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt++el+ +yLkk ++g++l+ +i+ v+iy ++Pw+Lp +k +e+ewyfF++rd+k+ tg r+nr+t++g+Wkatg+d+++ Kalax.0252s0019.1.p 12 PGFRFHPTEDELLEFYLKKIISGNSLPY-FAINFVNIYLHDPWHLPDLAKIGEREWYFFVPRDRKQGTGGRPNRTTANGFWKATGSDRRI 100 9************************9.56***********8888899*********************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++++gl+ktLvfy+grap+g ktdWvm+eyrl Kalax.0252s0019.1.p 101 ISTsePKRVIGLRKTLVFYRGRAPRGCKTDWVMNEYRL 138 98666778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.661	10	161	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-57	11	161	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSADPKSDMD LPGFRFHPTE DELLEFYLKK IISGNSLPYF AINFVNIYLH DPWHLPDLAK 60 IGEREWYFFV PRDRKQGTGG RPNRTTANGF WKATGSDRRI ISTSEPKRVI GLRKTLVFYR 120 GRAPRGCKTD WVMNEYRLPD PHNHRSASFS QEIVLCKVYR KATSLKELEQ RAAMDQDDEA 180 RGVTPPPHFS LLPRTPSTDS LSADFEQMLE SMKDGDEEGA VGIAAEGRSF GVSSSSEFMS 240 SSSSSTSSSG LKFPVGMDVM ADLQVPKLDA DWTQDQFWTQ FNSPWLMNLT PSYINLLNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	3	167	9	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	3	167	9	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	3	167	9	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	3	167	9	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	3	167	12	174	NAC domain-containing protein 19
3swm_B	2e-47	3	167	12	174	NAC domain-containing protein 19
3swm_C	2e-47	3	167	12	174	NAC domain-containing protein 19
3swm_D	2e-47	3	167	12	174	NAC domain-containing protein 19
3swp_A	2e-47	3	167	12	174	NAC domain-containing protein 19
3swp_B	2e-47	3	167	12	174	NAC domain-containing protein 19
3swp_C	2e-47	3	167	12	174	NAC domain-containing protein 19
3swp_D	2e-47	3	167	12	174	NAC domain-containing protein 19
3ulx_A	2e-47	4	161	8	168	Stress-induced transcription factor NAC1
4dul_A	2e-47	3	167	9	171	NAC domain-containing protein 19
4dul_B	2e-47	3	167	9	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841539.1	1e-111	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	5e-85	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2I4GCA4	1e-110	A0A2I4GCA4_JUGRE; NAC transcription factor 29-like
STRING	Gorai.008G038800.1	1e-110	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-89	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Kalax.0252s0019.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]