PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0253s0044.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 215aa MW: 23921.1 Da PI: 9.3188

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0253s0044.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.8e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0253s0044.1.p 78 FVCEICHKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	17.1	1.5e-05	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Kalax.0253s0044.1.p 154 WKCDKCSKKYAVQSDWKAHQKTC 176 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.39E-9	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.046	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.39E-9	149	175	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-5	149	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	94	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSNLTGDAVS VTSAADSGEE DDMHPQSQIK VVSAAASNRN GSLQLPPVKK RRNLPGTPDP 60 AAEVVALSPT TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRS SAEVKKRVYI 120 CPEPSCAHHN PARALGDLTG IKKYFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTRE 180 YKCDCGTIFS RLVSQPSFDA ELPDTIQADD EPKY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-22	150	191	3	44	Zinc finger protein JACKDAW
5b3h_F	1e-22	150	191	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022863095.1	1e-112	protein indeterminate-domain 6, chloroplastic-like
Refseq	XP_028073987.1	1e-107	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9ZWA6	1e-92	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2U1QGU3	1e-105	A0A2U1QGU3_ARTAN; Actin-binding FH2
TrEMBL	A0A3N7FC77	1e-105	A0A3N7FC77_POPTR; Uncharacterized protein
STRING	XP_008386763.1	1e-107	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-85	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0253s0044.1.p

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]