PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0253s0064.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 935aa    MW: 103729 Da    PI: 6.7732
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0253s0064.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Kalax.0253s0064.3.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214
                          99*****************************9777666.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Kalax.0253s0064.3.p 215 -WNDKNQLLLGIRRS 228
                          .7888889***9997 PP
2Auxin_resp121.27.7e-40253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaast+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Kalax.0253s0064.3.p 253 AAHAASTNSRFSIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-47113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-21126227No hitNo description
SMARTSM010196.1E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52127229IPR003340B3 DNA binding domain
PfamPF023629.5E-22127228IPR003340B3 DNA binding domain
PfamPF065071.7E-34253336IPR010525Auxin response factor
SuperFamilySSF542776.54E-7799875No hitNo description
PROSITE profilePS5174523.4800884IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MRLSSTGFSP QPQEGEKRVL NSELWHACAG PLVSLPTVGS RVVYLPQGHS EQVAATTNKE  60
VEAHIPSYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPADFGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSL QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRSSR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFSIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP FRLKRSWPGF KEEDMGMNSP LMWLRGDNGQ SLNFQGMGVN PWMQMQQRMD  420
ASMFGLQSDM YQAMAAAAFQ EMKQAQPPNL LQFQQPQPVG NAPACLIPPQ MLHQTHAQLS  480
YLQSVQESQA QAHGRAEAHA HAQSQAQAQA QAQMQVQSQS QSQSGSLSHS QTQSVQTNQI  540
QRQLQQQSSF NSHHGQLDQR QQMRSMIHQR VPNMVSNTPQ YVSNAQSQSP SMQPISTLCQ  600
QQSFTGSDGN LVGVSSPAIS PLQTLLGSFA TDESLHLFNL PCNTPVPAVS SSDWPSKRVA  660
LQHDPHPHPP SPGSQRLLSQ LEQQLGESQT NLLHNIVSLP PFPGRECSIE HEGSTDPKSH  720
LLFGVNLDPT SLLLQNGISN LRGVGGDCES SPMPFASSSF MSNSGSDFTL NPTMTPSSCI  780
DESGFLQSPE NVGEANPLNK TFVKVYKSGS FGRSLDITKF SSYQELRSEL ARMFGLEGLL  840
EYPMRSGWQL VFVDRENDVL LLGDDPWPEF VNSVWCIKIL SPQEVQQMGK RGLELLNSVP  900
IQRLSSNGCE EYSSSRQESR NLSTGITSVG SLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640724.10.0auxin response factor 6-like isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2C9U6V80.0A0A2C9U6V8_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]