PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0254s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 169aa    MW: 18781.7 Da    PI: 8.6145
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0254s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB160.13.4e-5027118293
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          re+d+flP+an+srimk ++P n+ki++dak++vqec sefisf+tseasdkcq+ekrktingdd+lwa++ lGfe+y+epl+vyl+kyr
  Kalax.0254s0016.1.p  27 REKDKFLPVANISRIMKIAVPPNGKIANDAKDIVQECTSEFISFITSEASDKCQKEKRKTINGDDILWAMSLLGFEEYIEPLRVYLAKYR 116
                          89**************************************************************************************** PP

                NF-YB  92 el 93 
                          ++
  Kalax.0254s0016.1.p 117 KV 118
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-4725117IPR009072Histone-fold
SuperFamilySSF471131.06E-3530118IPR009072Histone-fold
PfamPF008081.1E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-216078No hitNo description
PRINTSPR006152.4E-217997No hitNo description
PRINTSPR006152.4E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGSAPGSPAA VGGDYKCGGQ SPNLTAREKD KFLPVANISR IMKIAVPPNG KIANDAKDIV  60
QECTSEFISF ITSEASDKCQ KEKRKTINGD DILWAMSLLG FEEYIEPLRV YLAKYRKVLL  120
LFPFTITLET TFRLRLRYWN LNSRVMSQLT DLAADHSLRE VTPCMTGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4324117194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4324117194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910503.15e-58nuclear transcription factor Y subunit B-1-like
SwissprotQ9SLG03e-54NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A1R3IEU02e-56A0A1R3IEU0_9ROSI; Transcription factor, CBFA/NFYB, DNA topoisomerase
STRINGGorai.009G315600.16e-57(Gossypium raimondii)
STRINGevm.model.supercontig_1.2643e-57(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.83e-55nuclear factor Y, subunit B1