PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0255s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26855.2 Da    PI: 9.5857
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0255s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1984138256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq + Lee F++n++++ +++eeLA++l+L  rqV vWFqNrRa+ k
  Kalax.0255s0004.1.p  84 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEELADRLKLRPRQVEVWFQNRRARSK 138
                          788899***********************************************98 PP
2HD-ZIP_I/II117.19.9e-3884172189
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                          +kk+rlskeq++lLEesF+++++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n++L+keveeLr+
  Kalax.0255s0004.1.p  84 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEELADRLKLRPRQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLTEQNQKLQKEVEELRA 172
                          69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-1956141IPR009057Homeodomain-like
SuperFamilySSF466898.55E-2070141IPR009057Homeodomain-like
PROSITE profilePS5007117.81580140IPR001356Homeobox domain
SMARTSM003891.0E-1782144IPR001356Homeobox domain
CDDcd000861.58E-1683141No hitNo description
PfamPF000468.5E-1784138IPR001356Homeobox domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PfamPF021835.7E-10140174IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.2E-21140183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGGVTPTSTC LDLTISVPGS SSARDVNMKP LRLLSKRSEP DDNWINLGYP KTSEDAEDND  60
TDSPNEDQGR GGGGGGWDRN PPPRKKLRLS KEQSRLLEES FRQNHTLNPK QKEELADRLK  120
LRPRQVEVWF QNRRARSKLK QTEIECEYLK RWFGSLTEQN QKLQKEVEEL RAMKVGPPSV  180
LSARSCEPTL ASSLTMCPRC ERVSSNTARV EKPATGPAST AAMSDKVAAL QQFRQPSAAF  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605480.18e-80homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-68HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-68HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLI1ND772e-78I1ND77_SOYBN; Uncharacterized protein
STRINGGLYMA20G01770.13e-79(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-69homeobox-leucine zipper protein 17