PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0257s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 764aa    MW: 83408.4 Da    PI: 7.042
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0257s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.77.4e-16437475240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C  +C C++C+Nk 
  Kalax.0257s0013.1.p 437 SCKRCNCKKSKCLKLYCECFAAGVYCIGTCACQNCFNKP 475
                          689**********************************96 PP
2TCR49.21.1e-15522560139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Kalax.0257s0013.1.p 522 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCESCKNV 560
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-16436477IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.832437562IPR005172CRC domain
PfamPF036382.7E-11439474IPR005172CRC domain
SMARTSM011142.4E-15522563IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11524559IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MMDTPERNQI GSSLSRCEDS PVFNYLSNLS PIKPTKSAPI NQTFTSLNFS SLPSIFTSPH  60
VSSHKESRFL KSTPDKSQSE FSNIDACSNK ENEVIVDVNQ LHKYSSELHK ESVALDSLGG  120
APLEPRHEDS DLPVELLQNL KANACHSITE DSSQSAEAAN SSVMIDQGPS SSRPALHKGP  180
IGWESLISDG ADLLMFDSPN MAKDLKELFK SPAVERVGTL LASQFLQDTP DFLKSDSTFL  240
VDACELQNEV HHHAESERID YAHDDYPNFM TDCMTSHSSE NMDDELTTSL HRGVRRRCLV  300
FDTNGAQKFV LPDPASSNPS MCMHDNKRGV TSKNADSSTL RILPGIGLHL NALATSGDHG  360
IQVSVSSSST SFQLPTTPQE SVHDVLTGAS LGKNVDPGMI QGSEDASLAS GLVSMDDMNQ  420
NSPIKKRCKP ESSGDESCKR CNCKKSKCLK LYCECFAAGV YCIGTCACQN CFNKPIHEDT  480
VLATRKQIES RNPLAFAPKV IRTSDPLPDV KDEVVSTPAS ARHKRGCNCK KSSCLKKYCE  540
CYQGGVGCSI NCRCESCKNV FGTKDGSAPV APHDDDDDEE EESEKVAKKI NNKGLQNAKP  600
HNNEEHSPNT FPATPLRLTR FNLYEKQNLI RNRGSSYPFS LMESCSSRMP VQLPFSSKGK  660
PPRSSFLTVG SASGLQASQK FGKPNYVKPP PKYQRNYPAG QNEIEIPEML RNNGSPNSVM  720
KTGSPNSKRV SSPQSTFGSS PARRSTRKLI LQSIPSFPSL TQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1644156014121Protein lin-54 homolog
5fd3_B3e-1644156014121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649949.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLF6HDS90.0F6HDS9_VITVI; Uncharacterized protein
STRINGVIT_05s0020g03880.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-107TESMIN/TSO1-like CXC 2