PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0257s0013.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 573aa    MW: 62295.1 Da    PI: 7.754
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0257s0013.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.25.2e-16274312240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C  +C C++C+Nk 
  Kalax.0257s0013.3.p 274 SCKRCNCKKSKCLKLYCECFAAGVYCIGTCACQNCFNKP 312
                          689**********************************96 PP
2TCR49.67.6e-16359397139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Kalax.0257s0013.3.p 359 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCESCKNV 397
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-16273314IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.832274399IPR005172CRC domain
PfamPF036381.9E-11276311IPR005172CRC domain
SMARTSM011142.4E-15359400IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-11361396IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MIDQGPSSSR PALHKGPIGW ESLISDGADL LMFDSPNMAK DLKELFKSPA VERVGTLLAS  60
QFLQDTPDFL KSDSTFLVDA CELQNEVHHH AESERIDYAH DDYPNFMTDC MTSHSSENMD  120
DELTTSLHRG VRRRCLVFDT NGAQKFVLPD PASSNPSMCM HDNKRGVTSK NADSSTLRIL  180
PGIGLHLNAL ATSGDHGIQV SVSSSSTSFQ LPTTPQESVH DVLTGASLGK NVDPGMIQGS  240
EDASLASGLV SMDDMNQNSP IKKRCKPESS GDESCKRCNC KKSKCLKLYC ECFAAGVYCI  300
GTCACQNCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRT SDPLPDVKDE VVSTPASARH  360
KRGCNCKKSS CLKKYCECYQ GGVGCSINCR CESCKNVFGT KDGSAPVAPH DDDDDEEEES  420
EKVAKKINNK GLQNAKPHNN EEHSPNTFPA TPLRLTRMPV QLPFSSKGKP PRSSFLTVGS  480
ASGLQASQKF GKPNYVKPPP KYQRNYPAGQ NEIEIPEMLR NNGSPNSVMK TGSPNSKRVS  540
SPQSTFGSSP ARRSTRKLIL QSIPSFPSLT QP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1627839714121Protein lin-54 homolog
5fd3_B2e-1627839714121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839385.11e-177PREDICTED: protein tesmin/TSO1-like CXC 3
TrEMBLA0A2I4G6781e-176A0A2I4G678_JUGRE; protein tesmin/TSO1-like CXC 3
STRINGVIT_05s0020g03880.t011e-174(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-89TESMIN/TSO1-like CXC 2