PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0258s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 131aa    MW: 14947.9 Da    PI: 10.3664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0258s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-125396447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         W +eE+  ++++ ++lG g+Wk I++++ ++R++ q+ s+ qky
  Kalax.0258s0007.1.p 53 WNEEEHASFLRGLQELGRGDWKNISKKFVTTRSPSQVGSHAQKY 96
                         *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.3E-4625IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.993720IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129412.41145101IPR017930Myb domain
SuperFamilySSF466897.8E-144699IPR009057Homeodomain-like
SMARTSM007179.8E-94999IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-144999IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.1E-95095IPR009057Homeodomain-like
CDDcd001679.61E-85397No hitNo description
PfamPF002493.4E-105396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKVDRECSNC GEKGHNTRTC IAQKKGMFKL FGVKIMHSNE NIKTSYQRKG VLWNEEEHAS  60
FLRGLQELGR GDWKNISKKF VTTRSPSQVG SHAQKYFGRR NGRATDKLRK SISDQEVEHP  120
DQLGETYTKT *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278155.27e-31PREDICTED: transcription factor MYB1R1 isoform X1
RefseqXP_019081570.13e-31PREDICTED: transcription factor MYB1R1 isoform X2
SwissprotQ9FKF92e-24M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A438INP84e-30A0A438INP8_VITVI; Putative transcription factor
STRINGSolyc08g065380.2.12e-27(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.18e-27MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]