PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0259s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 431aa    MW: 46477.8 Da    PI: 9.683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0259s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05201223223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  +nL++H+ + H
  Kalax.0259s0020.1.p 201 ACSQCGEVFPKLENLEHHQAVrH 223
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280200223IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037200228IPR007087Zinc finger, C2H2
SuperFamilySSF563993.55E-23225428No hitNo description
Gene3DG3DSA:3.90.228.104.7E-13227428IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKLAASSSSH SLTSILLSSY SYLLALFFFM SLFTFQQPDP KPNTKKKKKQ KEKEKEKQKQ  60
QQPSSSSWDQ IKNLLHCKQT EVIIPGKAPV EKQSGSSKNN NGSSNYSCKS ICRFGDVVHG  120
TTRVVHRADN SPEGSSVGRE SGRKKIHGSS GQVVGNGSGR SVGGGSCGPS GLQFRKLSGC  180
YECHTIVDPS RYPIPRRTVC ACSQCGEVFP KLENLEHHQA VRHAVSELGP EDSGRNIVEI  240
IFKSSWLKKD TPICKIERIL KVHNTNRTIQ RFEDCRDAIK LRASASTKKN PRCAADGNEL  300
LRFHCTTLSC SLGARNSSAL CAAIPGCSIC TLIRHGFQPA NGGGVFTAAG SGRAHDGVEG  360
KEGRRAMVVC RVVAGRVRRE GAAEPEEGGG GSGFDSVAGR AGTYSDLEEL TVFNPRAILP  420
CFVVIYKSAD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104443.11e-174uncharacterized protein LOC21399114
TrEMBLA0A2P5F7Z41e-177A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_010104443.11e-173(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-122C2H2-like zinc finger protein