PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0262s0045.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 288aa    MW: 32258.4 Da    PI: 4.648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0262s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11186229654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  +++Y+k+L
  Kalax.0262s0045.2.p 186 LMAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILADTIDYMKEL 229
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-15183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-5187234No hitNo description
Gene3DG3DSA:4.10.280.104.5E-16187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELSQPFLLE EWLAMKRENC STYQTGVEMN EFYTDGWSCD FIDEPQALAA STDAAMGTAA  60
GFALPQMEPY FDVPFSEVYN TLDACFDAPA PAAADQFNLA YEINNGATLL PPIHDQYTSM  120
MDEDFTFFSN DCVELMKEDK HASGCKVEMV QSPNENLGSS TSKMSGGGRE RRNGVKKAGG  180
QPSKNLMAER RRRKRLNDRL SMLRSIVPRI SKMDRTSILA DTIDYMKELL EKVSKLEEEE  240
EEHTEAGPIN KLKELKSSEG QAKNSPKVSL SKWLLIIRSS GEHFLTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188195ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-22beta HLH protein 93