PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0264s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 370aa    MW: 41510.5 Da    PI: 8.1105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0264s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5381321127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv++yL++k+++  +++ ++i+ vd++k+ePwdLp  ++ +e+ewyfF  +d+ky+tg r+nrat++gyWk+tgkdk
  Kalax.0264s0036.1.p   8 LPPGFRFHPTDEELVTYYLNNKIADCGFTC-RAITAVDLNKCEPWDLPVLASMGEREWYFFNLKDRKYPTGLRTNRATQAGYWKTTGKDK 96 
                          79**************************99.89***************8777899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          e+++ +g  vglkktLvfy+grapkgek++Wvmheyr
  Kalax.0264s0036.1.p  97 EIYK-GGVIVGLKKTLVFYRGRAPKGEKSNWVMHEYR 132
                          ***9.*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-625154IPR003441NAC domain
PROSITE profilePS5100557.6228154IPR003441NAC domain
PfamPF023658.0E-289132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNCMEEYLPP GFRFHPTDEE LVTYYLNNKI ADCGFTCRAI TAVDLNKCEP WDLPVLASMG  60
EREWYFFNLK DRKYPTGLRT NRATQAGYWK TTGKDKEIYK GGVIVGLKKT LVFYRGRAPK  120
GEKSNWVMHE YRPEAKPTFK SNKDEWVVCR VFKKSSSTAK KPPHTPSSSS QQYTALDDSL  180
TPTNIVTHDF GETIEIPNHN VPNGGSSTRS YDSSADHQLS NMIQPQNQYN ISSMNMKMDF  240
DWAMSKQTSA QAVNITSLLT DHNDQSLQRN AVTSSCSSPN MAFNSLLLKA LQLRSYQPGP  300
LINPSLMTSI ENFSALNSTP GQQLARNVTS SFGTDYNSNM LAASSSSSNR QLQVQDQVQE  360
QAFSMDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53816017171NO APICAL MERISTEM PROTEIN
1ut4_B2e-53816017171NO APICAL MERISTEM PROTEIN
1ut7_A2e-53816017171NO APICAL MERISTEM PROTEIN
1ut7_B2e-53816017171NO APICAL MERISTEM PROTEIN
4dul_A2e-53816017171NAC domain-containing protein 19
4dul_B2e-53816017171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774834.11e-113NAC domain-containing protein 100-like
TrEMBLB9IE381e-107B9IE38_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03700.11e-107(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.15e-96NAC domain containing protein 58