PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0265s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 320aa    MW: 35682.7 Da    PI: 8.188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0265s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14136182455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++N++f  L + +P +     kK++Ka++L++A++Y+k+Lq
  Kalax.0265s0022.1.p 136 DHIMAERNRREKLNQRFIALSSAIPGL-----KKMDKATVLQEATKYVKQLQ 182
                          599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.815132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-18136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-14137186No hitNo description
SuperFamilySSF474591.96E-17137196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11137182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-15138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSGAIIPTEA PFDDLQHSNY SLYAYQLPIV ETAMNDFQIN KNPMEQLTTN IRGSYDVSTT  60
SDADAAIYFY SSVNPTGAAW PKQENHCYNN NRPSQFTNGD YPVWIENYSS MPGREVKGRE  120
TNAIGATTSR SSEVQDHIMA ERNRREKLNQ RFIALSSAIP GLKKMDKATV LQEATKYVKQ  180
LQERIKTLEK QTKSITMMES AVFVKKSLLV INDINKSGFS NETSFNEKTL SDESLPVIEV  240
RFCEKKVLIR VHCDRKKGAS AEKILGEIAK LHLTVVNSNV LAFGSSALDV TVLAKMNPEC  300
SMAEKELVKT LCVALKSFI*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9T0721e-50BH025_ARATH; Transcription factor bHLH25
STRINGPOPTR_0009s08500.18e-66(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-53bHLH family protein