PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0265s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 253aa    MW: 27869.3 Da    PI: 9.6257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0265s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1461113155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+r+hn+ Er+RR++iN+ ++ Lr+llP +  ++s+++s  +++ +  ++I +Lq
  Kalax.0265s0036.1.p  61 RKRNHNASERQRRKKINDLYSSLRSLLPAS--EQSGRMSIPTTVARILKFIPELQ 113
                          7999*************************5..5*****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1559130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.22160112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1161113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-1061117No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1361133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-966118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLSVTSSSST SLFGWPSDEA VYGHRINQGF YELEELAAAA HADHLGTPGG DQGGGEYGDL  60
RKRNHNASER QRRKKINDLY SSLRSLLPAS EQSGRMSIPT TVARILKFIP ELQGEVERLE  120
KKKQAMSKKI NKVRESVFSS SSSKLAGTDQ KVRGTDEAKA STTRDNSNRS SVLTSKVGDR  180
EFVIQISTLQ VSVSEILLSL EEDGFQLINA SSSESFSGRV FSNLHLQKVG VIRKMECEGL  240
DEKLLSMLEK RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16074RKRNHNASERQRRKK
26172KRNHNASERQRR
36272RNHNASERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-35bHLH family protein