PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0266s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23562.1 Da    PI: 9.9525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0266s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-211965349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          e +sn  vtfskRr g++KKA+EL++LC++++a+i+fs+  k++ +
  Kalax.0266s0036.1.p 19 MEKESNLLVTFSKRRSGLFKKASELCTLCGVQIAIIVFSPGKKVFSF 65
                         57889999********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.595969IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-29968IPR002100Transcription factor, MADS-box
CDDcd002654.57E-311079No hitNo description
SuperFamilySSF554551.83E-261084IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-161131IPR002100Transcription factor, MADS-box
PfamPF003193.3E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDQIERKNKG RRKIKMAKME KESNLLVTFS KRRSGLFKKA SELCTLCGVQ IAIIVFSPGK  60
KVFSFGHPNV ETIVDRYLTR NPSPNFSSPQ PNNNSNINML EAHRSAKIQE LNAEVTQVTT  120
QLEAEKKRGE ALDKMRKMNQ NKCWWENNVS ELNLAQLQHL LVALEELKID VAKEASKCVM  180
GASTSNQIVP YLGTYNDTYP GSNIFNNL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271109.12e-74PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_024034812.13e-74agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2N9GC172e-74A0A2N9GC17_FAGSY; Uncharacterized protein
STRINGVIT_03s0088g00550.t018e-74(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-54AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]