PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0266s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 309aa    MW: 33773.4 Da    PI: 6.7957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0266s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-11126172455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR+++ ++f  L  ++P +     kK +Ka++L  +++Y+++++
  Kalax.0266s0040.1.p 126 DHIMAERRRREKLSQRFIALSAIVPGL-----KKTDKASVLGDTIKYLRQME 172
                          699************************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9126172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-12127176No hitNo description
SuperFamilySSF474591.27E-15127193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDVPNFNSLS YQEGSRHVNQ WVSLSSLDHG RFMDADGGLQ VQAGSWNSGM QNSNSSTGSN  60
VSFVGMGYGN GKLAGLQMPK EEVSSWEDAS PFASPESMSV SMPVPRSPLG VVKTQPVSRA  120
GGDAQDHIMA ERRRREKLSQ RFIALSAIVP GLKKTDKASV LGDTIKYLRQ MEERVKSLEE  180
EAKQKTVHSM VLQVKKPQLL PSRDEAPSSE PDTDSFHTSF NDALPEIEAR ICDKSVLIRI  240
VCEKRQGGVV EQVLAEVEKL HLTLINSSVL SFGASSLNII IVAQMNPQFC KTIKEIVMTM  300
FSSLQNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13126184866Transcription factor MYC2
5gnj_B7e-13126184866Transcription factor MYC2
5gnj_E7e-13126184866Transcription factor MYC2
5gnj_F7e-13126184866Transcription factor MYC2
5gnj_G7e-13126184866Transcription factor MYC2
5gnj_I7e-13126184866Transcription factor MYC2
5gnj_M7e-13126184866Transcription factor MYC2
5gnj_N7e-13126184866Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135ERRRRE
2131136RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.15e-70transcription factor bHLH25-like
RefseqXP_015388301.15e-70transcription factor bHLH25-like
TrEMBLA0A2H5QA051e-68A0A2H5QA05_CITUN; Uncharacterized protein
STRINGXP_006486799.12e-69(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-56bHLH family protein