PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0267s0058.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21566.6 Da PI: 9.0636

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0267s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.4	2.2e-14	8	50	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ien +r++t+ kR++ il K E+ +LC++e++ ii+s+ + Kalax.0267s0058.1.p 8 FIENGKKRKTTYKKRKANILNKLTEITTLCGVEACAIIYSPYQ 50 8***************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.895	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-10	1	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-17	3	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-13	8	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVKRHVDFIE NGKKRKTTYK KRKANILNKL TEITTLCGVE ACAIIYSPYQ EGPEIWPPSR 60 EAVNGVLRRL QNMPLTLQTQ NALTQEDLVQ KQIRKLREEL REQERKNREE EIRAGMSHML 120 HYGPGLLYQM SLEDFNDTAW VLAEMEGQVE EALSKLGRGA ANLPADDAAG GVNGKPKGVH 180 QFNNNNVNPK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	4e-17	AGAMOUS-like 87

Link Out ? help Back to Top
Phytozome	Kalax.0267s0058.1.p