PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0267s0063.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 307aa MW: 31778.3 Da PI: 5.8839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0267s0063.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k Fs++ L H++ H Kalax.0267s0063.1.p 75 HKCKYCPKEFSTSQALGGHQNAH 97 79******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.89E-6	71	102	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	73	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-6	74	98	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.907	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEAEKVRSRN KGKEDAEEGD ADKNKNSGDG GGGLSLALVI APQQAAGESS GAGSERMRSR 60 RRREEEVAAT ARRVHKCKYC PKEFSTSQAL GGHQNAHKPE RVADKFKESL GKIGAIRREP 120 NASHRYQPYY ANNSDNVAGG YNFAGVGGFS SGHPLYQLPH SSLLAAGLGG GGHVVPVQMG 180 APAPRFGGQG FAQRVRSWSE FLRRPNAASG ESSSSGRTGG SDGRRLSYLP GGIGFGPNAN 240 PNDHANPDTN GNPDGNVDAN VNPDNADGSN ADGEAEAGAD AVEAADPGDG DAEADGEGEL 300 DLTLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	3e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0267s0063.1.p