PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0268s0005.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 417aa    MW: 43870.7 Da    PI: 8.9033
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0268s0005.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.7e-124165327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C++++ tGtCk+G++Ck++H++
  Kalax.0268s0005.3.p 41 QPVCKYYMMTGTCKFGSSCKYHHPR 65
                         689********************96 PP
2zf-CCCH36.86.7e-1284109227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG+CkyG +CkF+H++
  Kalax.0268s0005.3.p  84 GEKECSYYVKTGQCKYGVTCKFHHPQ 109
                          7899********************97 PP
3zf-CCCH40.25.6e-13250276127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG CkyG++C+++H+p
  Kalax.0268s0005.3.p 250 PGQPECQYYMKTGDCKYGSSCRYHHPP 276
                          5789*********************97 PP
4zf-CCCH33.95.1e-11296319326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++C ffa++G CkyG+ Ck+ H+
  Kalax.0268s0005.3.p 296 APPCIFFAQYGVCKYGSACKYDHS 319
                          689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.1263866IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-73865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-63966IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-104165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-54365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38982110IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-582109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-684110IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-984109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-488108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389249277IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7249276IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6253277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6255277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737293321IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5293320IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8296319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5296321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4298319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMKCLTEFVG AANVRIMLSD CCQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK  60
YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP  120
ALGISPGPAP GLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG  180
MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS  240
QRDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI  300
FFAQYGVCKY GSACKYDHSS RTGRLSYSPS ASSLTDIPVA PLPVGSSTGT LAASSSSSDL  360
HQEIAAVSRK DSSPTPQISS SATPPTSTSL SSPPPKSQPA PHSTGSTSSK EAHSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.11e-138zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-109C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2P6QY681e-134A0A2P6QY68_ROSCH; Putative transcription factor C3H family
STRINGVIT_05s0020g01650.t011e-134(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-101C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]