PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0269s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 415aa    MW: 47147.3 Da    PI: 4.5182
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0269s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65e-16173257286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt++e+ +L++a  ++  + +r++l+   W+ev++k+ +e ++er+ +qC+++ + l+k+ykk+k+  +    ++ss++ yf++++
  Kalax.0269s0018.1.p 173 WTEHETFVLLDAWGDRFLQHGRKSLRSEEWQEVAEKVsQESKIERTDTQCRNRVDTLKKKYKKEKAKFGAA-GGQSSKWIYFKKMD 257
                          *************************************88999*************************9986.78888********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-23172258No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4173237IPR009057Homeodomain-like
PROSITE profilePS500906.214173230IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDDNEDDVRY NSNAAGGDRQ DQEGYDREKG AEQVGSYERL NNEYGENEGE DDEEAAEELV  60
EDEEEEDDDD DDEDGDGVQR IGNNVVNDGD EEDGDEGVEE KRNEYKRRIE EIDFEKHPKK  120
RRLKNLISNY EFAPRAVTQA QPSAVTANVV AASATPVPAP KHSSGGRNAL ADWTEHETFV  180
LLDAWGDRFL QHGRKSLRSE EWQEVAEKVS QESKIERTDT QCRNRVDTLK KKYKKEKAKF  240
GAAGGQSSKW IYFKKMDVLM SPPPKQPGLS CGVDSGEYVF SNPRVYLNRA NGLDEMRDSP  300
GHSDSTEDDT YDSDGLPPRR KKPVRVNNTN SNSRNYCSPM KLLADSLHNF SKIYEKIESN  360
KRQQMVELEK MRMDFHRDLE QEKKLILERA QAKIAKIWKG NDDENGASAE NMSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105121KRRIEEIDFEKHPKKRR
2117124PKKRRLKN
3118123KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024178741.11e-135trihelix transcription factor ASIL2-like
RefseqXP_024178742.11e-135trihelix transcription factor ASIL2-like
RefseqXP_024178743.11e-135trihelix transcription factor ASIL2-like
TrEMBLA0A2P6RWQ21e-134A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family
STRINGXP_006465549.11e-131(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-65Trihelix family protein