PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0270s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 323aa MW: 36459.4 Da PI: 8.9175

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0270s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.5	1.7e-46	16	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+++yL+ ++gkkl++ +vi ++iy++eP+ Lp ++k +e+ewyf+++rd+k a+g r+nr+t++g+Wkatg+d++ Kalax.0270s0004.1.p 16 LPGFRFHPTEEELLQFYLRSVISGKKLRA-DVIGFLNIYRHEPSALPGMAKIGEREWYFYVPRDRKRANGGRPNRTTETGFWKATGSDRR 104 59************************9.99***********888999********************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++++gl+ktLvfy+grap+g+ktdWvm+eyrl Kalax.0270s0004.1.p 105 IFSSasPKRVIGLRKTLVFYTGRAPRGSKTDWVMNEYRL 143 9777788**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-54	15	163	IPR003441	NAC domain
PROSITE profile	PS51005	52.833	15	163	IPR003441	NAC domain
Pfam	PF02365	9.9E-24	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSASDHMDEA RLDLKLPGFR FHPTEEELLQ FYLRSVISGK KLRADVIGFL NIYRHEPSAL 60 PGMAKIGERE WYFYVPRDRK RANGGRPNRT TETGFWKATG SDRRIFSSAS PKRVIGLRKT 120 LVFYTGRAPR GSKTDWVMNE YRLADSSSNP DKPDVVLCKI YRKATPLKVL EQRAAAEDEL 180 KWIKLQPGPS SPSSVSSQTE MMPFYDAELY DDPQPLIPKR EEEFNILDKV EPPQSQLEGA 240 ELNTVLNASS SSSSPSASSL TNSLKLPAGM DILPDLQVSK MNMDWTQDQF WTQFNSPWVT 300 MILIKCLYKH STPDSRSAIT SA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	17	165	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	17	165	22	170	NAC domain-containing protein 19
3swm_B	1e-43	17	165	22	170	NAC domain-containing protein 19
3swm_C	1e-43	17	165	22	170	NAC domain-containing protein 19
3swm_D	1e-43	17	165	22	170	NAC domain-containing protein 19
3swp_A	1e-43	17	165	22	170	NAC domain-containing protein 19
3swp_B	1e-43	17	165	22	170	NAC domain-containing protein 19
3swp_C	1e-43	17	165	22	170	NAC domain-containing protein 19
3swp_D	1e-43	17	165	22	170	NAC domain-containing protein 19
4dul_A	1e-43	17	165	19	167	NAC domain-containing protein 19
4dul_B	1e-43	17	165	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841539.1	1e-109	PREDICTED: NAC transcription factor 29-like
Swissprot	Q10S65	3e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2G9I7J9	1e-107	A0A2G9I7J9_9LAMI; Uncharacterized protein
TrEMBL	A0A2I4GCA4	1e-107	A0A2I4GCA4_JUGRE; NAC transcription factor 29-like
STRING	XP_004505672.1	1e-106	(Cicer arietinum)
STRING	GLYMA12G02540.1	1e-106	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-87	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Kalax.0270s0004.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]