PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0272s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 380aa MW: 43603.1 Da PI: 7.7227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0272s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.4	3.9e-07	44	121	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A++ GF+++k +skk +r++ + f+ k+ + ++ + ++ra+++tg +a+++ k ++ + v+++ +eHnH+l+ Kalax.0272s0006.1.p 44 AHKRGFQIQKVTSKKASRSD----YGFNIFKHFDSLAGDS--SAGFKRRASSHTGYRARVVFKTVGESSYIVKEFIEEHNHPLT 121 78888888888887774444....5666555544444444..477899**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-5	44	121	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-6	242	275	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MNDVYANETQ SFENNVEDHV PRNTHDQQLS PSTDEPTHND TDVAHKRGFQ IQKVTSKKAS 60 RSDYGFNIFK HFDSLAGDSS AGFKRRASSH TGYRARVVFK TVGESSYIVK EFIEEHNHPL 120 TSPEYHQFLM SNKSLNYAQL NFVMDCGNLK IGARQSHRIL KKLYGGYTHV GAQVVHVKNF 180 KRDFNIFMGN SDAQIIIDKL RSYQQNRLGF SFKFCVGTNG ELEKHFWADT ISKNQFAAFA 240 DCVAFDATYR TNKCNLIFIP FTGVDNNKSC VTFAAGEKEF LDKLDDVVWN CYHEPFEFED 300 AWKQLIDEYG LHGNKWLSGI FEIPVMDAQR HNKHLMDHES LNMFPVCRMS LHIKKHAAEI 360 FTPMKSDDVS AIPKHFIKK*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MNDVYANETQ SFENNVEDHV PRNTHDQQLS PSTDEPTHND TDVAHKRGFQ IQKVTSKKAS  60
RSDYGFNIFK HFDSLAGDSS AGFKRRASSH TGYRARVVFK TVGESSYIVK EFIEEHNHPL  120
TSPEYHQFLM SNKSLNYAQL NFVMDCGNLK IGARQSHRIL KKLYGGYTHV GAQVVHVKNF  180
KRDFNIFMGN SDAQIIIDKL RSYQQNRLGF SFKFCVGTNG ELEKHFWADT ISKNQFAAFA  240
DCVAFDATYR TNKCNLIFIP FTGVDNNKSC VTFAAGEKEF LDKLDDVVWN CYHEPFEFED  300
AWKQLIDEYG LHGNKWLSGI FEIPVMDAQR HNKHLMDHES LNMFPVCRMS LHIKKHAAEI  360
FTPMKSDDVS AIPKHFIKK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-15	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0272s0006.1.p