PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0275s0026.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 298aa MW: 33270.6 Da PI: 7.929

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0275s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F + ++ H+r+H Kalax.0275s0026.1.p 5 HSCKICNRKFANGKSMGGHMRSH 27 79*******************99 PP
2	zf-C2H2	14.4	0.00011	197	218	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ L H+r+H Kalax.0275s0026.1.p 197 RCQMCKKVFKNYQALGGHMRNH 218 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.89E-5	4	32	No hit	No description
PROSITE profile	PS50157	10.658	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	5	27	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.2E-6	5	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.058	196	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	196	218	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.39E-8	197	257	No hit	No description
Pfam	PF13912	6.4E-10	197	220	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.5E-11	234	257	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.64	235	257	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.25	235	257	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	237	257	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MELKHSCKIC NRKFANGKSM GGHMRSHFAK LPIQSSSSAS RQPESLNARA PVSCLSNSYD 60 PLGQNLDYGC GGYQAKNATS ANRISAMAAL RVRASSRKRS KRIPRFIKKE SKPISATPLD 120 PRYGEFTSPE TLVLVEDAAR CLMKLSKDKW PENDERLHGN HFPYFVETHS EDDTLSDEEE 180 DEEGDLSEPV EEIFGRRCQM CKKVFKNYQA LGGHMRNHRR PPVARPVPVV EKRVFQCDIC 240 LKVFGSGQAL GGHKKVHLFM DKKTVIENDL PILENDSDSD CDFISESTSA SEISSDT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-18	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0275s0026.1.p