PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0275s0046.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 262aa    MW: 29622.2 Da    PI: 6.5334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0275s0046.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-1954106456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + ++++eq++eLe+ Fe  ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k
  Kalax.0275s0046.2.p  54 KKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWK 106
                          44589***********************************************9 PP
2HD-ZIP_I/II119.81.5e-3852142191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          e+k+rl++eqv+ LE+sFe  +kL+perK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy  Lk+++ + +++n++L++++++Lr+e
  Kalax.0275s0046.2.p  52 ERKKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWKTKQLEKDYGLLKKQFASAVADNDKLQSQNKQLRQE 141
                          69**************************************************************************************87 PP

          HD-ZIP_I/II  91 l 91 
                           
  Kalax.0275s0046.2.p 142 F 142
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-2128109IPR009057Homeodomain-like
SuperFamilySSF466892.01E-2045110IPR009057Homeodomain-like
PROSITE profilePS5007116.90848108IPR001356Homeobox domain
SMARTSM003896.5E-1951112IPR001356Homeobox domain
CDDcd000866.95E-1653109No hitNo description
PfamPF000462.9E-1654106IPR001356Homeobox domain
PRINTSPR000315.5E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000315.5E-688104IPR000047Helix-turn-helix motif
PfamPF021835.1E-8108147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMFLKRSVSF TEMNAGFEEE EEDGVGNNQE DELSDECGGG GGGGGSGLGG GERKKRLKRE  60
QVRELERSFE LGNKLDPERK LQLAKSLGLQ PRQVAIWFQN RRARWKTKQL EKDYGLLKKQ  120
FASAVADNDK LQSQNKQLRQ EFLKLQTLRS IDSVLEGTAS IKKEVPYHRT YSWSNNASEN  180
SYEMNLLDST RTPMISMNLF PSSFNRPATI SHLLETSLRS DPQPSRINQV VPDESLCNIL  240
CSMDDPTTGM WSWGEQHHFG Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259RKKRLKRE
2100108RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256832.11e-71PREDICTED: homeobox-leucine zipper protein ATHB-13-like
TrEMBLA0A1U8A4W03e-70A0A1U8A4W0_NELNU; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_010256832.14e-71(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.14e-51homeobox 3