PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0275s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 97aa    MW: 10819.3 Da    PI: 10.0233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0275s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-0728632054
                         HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +++L++llP+ + +++s+K+s   +L+++++YI+ L
  Kalax.0275s0052.1.p 28 MSKLQQLLPElRNRGRSEKVSAPKVLQETCNYIRTL 63
                         789*******777*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.477863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-72682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-72878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-52863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSNRRQSRHQ SSSGSAPRIT DEQIIGLMSK LQQLLPELRN RGRSEKVSAP KVLQETCNYI  60
RTLRKEVDDL SQRLTELLST IDADSPEAAI VRSLLS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233358.12e-40transcription factor PRE6 isoform X2
RefseqXP_015065156.12e-40transcription factor PRE6
SwissprotQ9LJX11e-34PRE5_ARATH; Transcription factor PRE5
TrEMBLM1A9E11e-37M1A9E1_SOLTU; Uncharacterized protein
STRINGSolyc02g067380.2.16e-40(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-35bHLH family protein