PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0277s0041.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 318aa    MW: 34301.6 Da    PI: 9.4007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0277s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-1260104147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Kalax.0277s0041.1.p  60 RQSWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104
                          899*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.5E-1654110IPR009057Homeodomain-like
PROSITE profilePS5129414.02355109IPR017930Myb domain
TIGRFAMsTIGR015575.9E-1858107IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-658110IPR009057Homeodomain-like
SMARTSM007179.9E-1059107IPR001005SANT/Myb domain
PfamPF002492.6E-1060104IPR001005SANT/Myb domain
CDDcd001671.31E-762105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVSNSSNPPD AFYLDPTGAA LPGLSPFAPT GDGGAIGVAS AAGEDGDKKV RKPYTITKSR  60
QSWTEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK SGGNEHLPPP  120
RPKRKAAHPY PHKASKSALP ELRGALLSSA SASSLPHPGY VLKHDVHSIP SDPSSRAAVA  180
SSWTDSSAQA SAIPNASQGD LKSTAEAMAI NSNNSAESNL RVQSARRTPV LANKSQAIRV  240
LPDFAQVYGF IGSVFDPNVS GHLQNLKQMD PIDVETVLLL MRNLSINLTS PAFEDHRKIL  300
STYEFDPKEP NYDVIGI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019454353.11e-126PREDICTED: protein REVEILLE 6-like isoform X1
RefseqXP_021643238.11e-126protein REVEILLE 6-like
SwissprotQ8H0W31e-105RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A061G0F61e-125A0A061G0F6_THECC; Homeodomain-like superfamily protein isoform 1
TrEMBLB9RIS71e-125B9RIS7_RICCO; DNA binding protein, putative
STRINGEOY233251e-125(Theobroma cacao)
STRINGXP_002513646.11e-125(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-91MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]